Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s43.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6160.48 49583.23
2. MT-ATP6 MT-ATP6 2480.92 19967.93
3. MT-CYB MT-CYB 1839.78 14807.65
4. MT-ND5 MT-ND5 1533.15 12339.71
5. MT-CO1 MT-CO1 1254.40 10096.16
6. RPLP1 ENSGALG00000030878 1254.40 10096.16 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. EEF1A EEF1A 1003.52 8076.93
8. MT-ND4 MT-ND4 947.77 7628.22
9. gga-mir-3533 ENSGALG00000027736 919.89 7403.82 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. TMSB4X ENSGALG00000026383 836.26 6730.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
11. RPS10 ENSGALG00000002813 752.64 6057.70 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPS3A ENSGALG00000010077 752.64 6057.70 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
13. MDK ENSGALG00000008367 696.89 5608.99 midkine [Source:NCBI gene;Acc:423196]
14. RPLP0 ENSGALG00000023294 696.89 5608.99 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. ENSGALG00000018384 ENSGALG00000018384 669.01 5384.59
16. RPL4 ENSGALG00000007711 669.01 5384.59 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPLP2 ENSGALG00000034811 641.14 5160.28 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
18. RPS8 ENSGALG00000010124 641.14 5160.28 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. HMGB2 ENSGALG00000010745 613.26 4935.88 high mobility group box 2 [Source:NCBI gene;Acc:396482]
20. RPL26 RPL26 557.51 4487.17
21. gga-mir-3527 gga-mir-3527 557.51 4487.17
22. RPL8 ENSGALG00000016232 529.63 4262.78 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL15 ENSGALG00000011290 501.76 4038.46 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPS4 RPS4 501.76 4038.46
25. ENSGALG00000028649 ENSGALG00000028649 473.88 3814.07
26. RPL35A ENSGALG00000007611, ENSGALG00000041230 473.88 3814.07 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
27. RPS23 ENSGALG00000015617 418.13 3365.36 ribosomal protein S23
28. MT-ND1 MT-ND1 390.26 3141.05
29. PSMC6 ENSGALG00000012408 390.26 3141.05 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
30. RPSA 390.26 3141.05 ribosomal protein SA
31. C5ORF13 C5ORF13 362.38 2916.65
32. MT-ND6 MT-ND6 362.38 2916.65
33. RPS11 ENSGALG00000017299 362.38 2916.65 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. RPS6 ENSGALG00000015082 362.38 2916.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. SNRPD1 ENSGALG00000041334 362.38 2916.65 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. CNN3 ENSGALG00000005597 334.51 2692.34 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
37. COX6C ENSGALG00000035996 334.51 2692.34 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
38. GAPDH ENSGALG00000014442 334.51 2692.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
39. RPL19 ENSGALG00000001658 334.51 2692.34 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
40. RPL21 ENSGALG00000027035 334.51 2692.34 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
41. RPL7A ENSGALG00000003197 334.51 2692.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. SET ENSGALG00000004701 334.51 2692.34 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
43. ANP32B ENSGALG00000037483 306.63 2467.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
44. ENSGALG00000018386 ENSGALG00000018386 306.63 2467.94
45. HMGB1 ENSGALG00000042875 306.63 2467.94 high mobility group box 1 [Source:NCBI gene;Acc:395724]
46. MT-ND3 MT-ND3 306.63 2467.94
47. RPL12 ENSGALG00000008806 306.63 2467.94 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
48. RPL18A 306.63 2467.94 ribosomal protein L18a
49. ANO1 ENSGALG00000041808 278.75 2243.55 anoctamin 1 [Source:HGNC Symbol;Acc:HGNC:21625]
50. EIF4G2 ENSGALG00000005587 278.75 2243.55 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
51. HSP90AA1 ENSGALG00000033212 278.75 2243.55 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
52. HSP90AB1 ENSGALG00000010175 278.75 2243.55 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
53. METRNL ENSGALG00000028354 278.75 2243.55 meteorin like, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:27584]
54. PHB2 ENSGALG00000014567 278.75 2243.55 prohibitin 2 [Source:NCBI gene;Acc:771124]
55. PPIA ENSGALG00000028600 278.75 2243.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
56. RAN ENSGALG00000002569 278.75 2243.55 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
57. RPL13 ENSGALG00000006179 278.75 2243.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
58. RPL14 ENSGALG00000043379 278.75 2243.55 ribosomal protein L14
59. RPL3 ENSGALG00000012172 278.75 2243.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
60. RPL5 ENSGALG00000005922 278.75 2243.55 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. ARCN1 ENSGALG00000007430 250.88 2019.23 archain 1 [Source:NCBI gene;Acc:770561]
62. BLMH ENSGALG00000004259 250.88 2019.23 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
63. CDC42 ENSGALG00000004796 250.88 2019.23 cell division cycle 42 [Source:NCBI gene;Acc:395917]
64. EIF2S1 ENSGALG00000009565 250.88 2019.23 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
65. ENSGALG00000002696 ENSGALG00000002696 250.88 2019.23
66. HMGN2 HMGN2 250.88 2019.23
67. MBD3 ENSGALG00000001101 250.88 2019.23 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
68. NASP ENSGALG00000010255 250.88 2019.23 nuclear autoantigenic sperm protein, transcript variant X3
69. PNRC1 ENSGALG00000015780 250.88 2019.23 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
70. RPL23A ENSGALG00000003966 250.88 2019.23 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
71. RPL27 ENSGALG00000002837 250.88 2019.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
72. RPL38 ENSGALG00000001465 250.88 2019.23 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
73. RPL6 ENSGALG00000004818 250.88 2019.23 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
74. RPS12 ENSGALG00000013990 250.88 2019.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
75. RPS2 ENSGALG00000005490 250.88 2019.23 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
76. RPS21 ENSGALG00000005338 250.88 2019.23 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
77. RPS28 ENSGALG00000024398 250.88 2019.23 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
78. ATP5F1 223.00 1794.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
79. CIRBP ENSGALG00000030918 223.00 1794.84 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
80. CRHOA CRHOA 223.00 1794.84
81. CSNK2A1 ENSGALG00000006197 223.00 1794.84 casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
82. EEF1B2 ENSGALG00000008590 223.00 1794.84 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
83. EIF1 ENSGALG00000028517 223.00 1794.84 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
84. GDI2 ENSGALG00000008169 223.00 1794.84 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
85. HNRNPDL ENSGALG00000023199 223.00 1794.84 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
86. ITGB1BP3 ENSGALG00000030120 223.00 1794.84 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
87. RPL32 ENSGALG00000027142 223.00 1794.84 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
88. RPL7 ENSGALG00000035252 223.00 1794.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. RPS15 ENSGALG00000015195 223.00 1794.84 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
90. RPS29 ENSGALG00000012229 223.00 1794.84 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
91. RPS7 ENSGALG00000016392 223.00 1794.84 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
92. SSR1 ENSGALG00000012798 223.00 1794.84 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
93. SUMO2 ENSGALG00000007971 223.00 1794.84 small ubiquitin-like modifier 2 [Source:NCBI gene;Acc:770125]
94. CREPT CREPT 195.13 1570.52
95. EIF4EBP1 ENSGALG00000003205 195.13 1570.52 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
96. FAM72A ENSGALG00000000791 195.13 1570.52 family with sequence similarity 72 member A, transcript variant X1
97. FN1 ENSGALG00000003578 195.13 1570.52 fibronectin 1 [Source:NCBI gene;Acc:396133]
98. HMGN5 ENSGALG00000007131 195.13 1570.52 high mobility group nucleosome binding domain 5, transcript variant X1
99. HOXA9 ENSGALG00000028983 195.13 1570.52 homeobox A9 [Source:NCBI gene;Acc:396096]
100. HSPA8 ENSGALG00000006512 195.13 1570.52 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA