Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s42.

Sample reads: 124,232. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6298.67 50700.70
2. EEF1A EEF1A 1613.08 12984.37
3. MT-ATP6 MT-ATP6 1433.84 11541.59
4. RPS3A ENSGALG00000010077 964.43 7763.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. RPS10 ENSGALG00000002813 879.08 7076.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 819.34 6595.22 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. MT-ND5 MT-ND5 785.20 6320.41
8. RPLP1 ENSGALG00000030878 785.20 6320.41 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. ENSGALG00000018384 ENSGALG00000018384 751.06 6045.60
10. HBZ ENSGALG00000023740 733.99 5908.20 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
11. MDK ENSGALG00000008367 716.92 5770.80 midkine [Source:NCBI gene;Acc:423196]
12. RPS8 ENSGALG00000010124 665.71 5358.59 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. MT-CYB MT-CYB 614.50 4946.37
14. RPL8 ENSGALG00000016232 614.50 4946.37 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RPLP0 ENSGALG00000023294 588.90 4740.31 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. GAPDH ENSGALG00000014442 580.37 4671.65 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MT-ND4 MT-ND4 563.30 4534.24
18. RPS23 ENSGALG00000015617 554.76 4465.50 ribosomal protein S23
19. RPS6 ENSGALG00000015082 503.55 4053.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
20. RPL4 ENSGALG00000007711 495.02 3984.63 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. HMGB2 ENSGALG00000010745 486.48 3915.89 high mobility group box 2 [Source:NCBI gene;Acc:396482]
22. RPL19 ENSGALG00000001658 486.48 3915.89 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. MT-CO1 MT-CO1 469.41 3778.48
24. MT-ND3 MT-ND3 469.41 3778.48
25. RPL15 ENSGALG00000011290 460.88 3709.82 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. TXN ENSGALG00000015704 460.88 3709.82 thioredoxin [Source:NCBI gene;Acc:396437]
27. RAN ENSGALG00000002569 452.34 3641.08 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. gga-mir-3533 ENSGALG00000027736 435.27 3503.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
29. ENSGALG00000002696 ENSGALG00000002696 418.20 3366.27
30. RPL7A ENSGALG00000003197 418.20 3366.27 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. MBD3 ENSGALG00000001101 409.67 3297.61 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
32. RPS12 ENSGALG00000013990 409.67 3297.61 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPS28 ENSGALG00000024398 409.67 3297.61 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
34. RPS4 RPS4 401.14 3228.95
35. HMGN5 ENSGALG00000007131 367.00 2954.14 high mobility group nucleosome binding domain 5, transcript variant X1
36. RPL14 ENSGALG00000043379 367.00 2954.14 ribosomal protein L14
37. ENSGALG00000018386 ENSGALG00000018386 358.46 2885.40
38. RPL21 ENSGALG00000027035 358.46 2885.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPL27A ENSGALG00000005948 358.46 2885.40 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. ANP32B ENSGALG00000037483 349.93 2816.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
41. HBE 349.93 2816.74 hemoglobin subunit epsilon
42. RPL32 ENSGALG00000027142 349.93 2816.74 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
43. TMSB4X ENSGALG00000026383 349.93 2816.74 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
44. PHB2 ENSGALG00000014567 341.39 2747.99 prohibitin 2 [Source:NCBI gene;Acc:771124]
45. RPS21 ENSGALG00000005338 341.39 2747.99 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
46. RPSA 341.39 2747.99 ribosomal protein SA
47. RPL6 ENSGALG00000004818 332.86 2679.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
48. RPS29 ENSGALG00000012229 332.86 2679.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. SNRPD1 ENSGALG00000041334 332.86 2679.33 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
50. ANO1 ENSGALG00000041808 324.32 2610.59 anoctamin 1 [Source:HGNC Symbol;Acc:HGNC:21625]
51. PSMC6 ENSGALG00000012408 315.79 2541.93 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
52. RPL37 ENSGALG00000014833 315.79 2541.93 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. TCEB3 ENSGALG00000034625 315.79 2541.93 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
54. RPL23A ENSGALG00000003966 307.25 2473.19 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
55. RPL13 ENSGALG00000006179 298.72 2404.53 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
56. RPL29 ENSGALG00000026978 298.72 2404.53 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
57. RPL36AL ENSGALG00000004952 290.18 2335.78 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
58. RPS15A ENSGALG00000006771 290.18 2335.78 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. PPIA ENSGALG00000028600 281.65 2267.12 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
60. RPL12 ENSGALG00000008806 281.65 2267.12 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
61. RPL26 RPL26 281.65 2267.12
62. RPS15 ENSGALG00000015195 281.65 2267.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPL35 ENSGALG00000035677 273.11 2198.38 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
64. CRHOA CRHOA 264.58 2129.72
65. RPS3 ENSGALG00000017330 264.58 2129.72 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
66. GALNT7 ENSGALG00000010744 256.04 2060.98 polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]
67. HMGN2 HMGN2 256.04 2060.98
68. RPL3 ENSGALG00000012172 256.04 2060.98 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
69. gga-mir-3527 gga-mir-3527 256.04 2060.98
70. HBG1 HBG1 247.51 1992.31
71. NME2 ENSGALG00000002932 247.51 1992.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
72. PNRC1 ENSGALG00000015780 247.51 1992.31 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
73. RPL18A 247.51 1992.31 ribosomal protein L18a
74. RPL38 ENSGALG00000001465 247.51 1992.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. SET ENSGALG00000004701 247.51 1992.31 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
76. RPS13 ENSGALG00000006096 238.97 1923.57 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. RPS14 ENSGALG00000004588 238.97 1923.57 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS16 ENSGALG00000026490 238.97 1923.57 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
79. HSPA8 ENSGALG00000006512 230.44 1854.91 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
80. MT-ND1 MT-ND1 230.44 1854.91
81. RPS11 ENSGALG00000017299 230.44 1854.91 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
82. MT-ND6 MT-ND6 221.90 1786.17
83. NCL ENSGALG00000032930 221.90 1786.17 nucleolin [Source:NCBI gene;Acc:396201]
84. RPL27 ENSGALG00000002837 221.90 1786.17 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
85. RPS7 ENSGALG00000016392 221.90 1786.17 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
86. SLC25A6_1 ENSGALG00000016691 221.90 1786.17 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
87. ENO1 ENSGALG00000002377 213.37 1717.51 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. PTBP1 ENSGALG00000001962 213.37 1717.51 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
89. CIRBP ENSGALG00000030918 204.83 1648.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
90. CNN3 ENSGALG00000005597 204.83 1648.76 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
91. H3-IX H3-IX 204.83 1648.76
92. STMN1 ENSGALG00000001475 204.83 1648.76 stathmin 1 [Source:NCBI gene;Acc:396057]
93. EEF1D 196.30 1580.10 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. FKBP4 ENSGALG00000014331 196.30 1580.10 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
95. FTH FTH 196.30 1580.10
96. GNB2L1 ENSGALG00000000122 196.30 1580.10 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
97. P4HA2 ENSGALG00000006677 196.30 1580.10 prolyl 4-hydroxylase subunit alpha 2 [Source:NCBI gene;Acc:416326]
98. RPL24 ENSGALG00000015339 196.30 1580.10 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
99. RPS20 ENSGALG00000014432 196.30 1580.10 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
100. UBB ENSGALG00000004509 196.30 1580.10 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA