Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s39.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5639.73 45392.57
2. EEF1A EEF1A 1604.09 12910.86
3. RPS3A ENSGALG00000010077 958.10 7711.47 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
4. RPS10 ENSGALG00000002813 925.44 7448.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. HBZ ENSGALG00000023740 903.66 7273.30 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
6. MT-ATP6 MT-ATP6 802.05 6455.47
7. RPL8 ENSGALG00000016232 693.17 5579.13 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
8. ENSGALG00000018384 ENSGALG00000018384 675.03 5433.12
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 649.62 5228.60 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. MT-CYB MT-CYB 624.22 5024.17
11. RPLP1 ENSGALG00000030878 620.59 4994.95 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. gga-mir-3533 ENSGALG00000027736 591.55 4761.22 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPS23 ENSGALG00000015617 577.04 4644.43 ribosomal protein S23
14. MDK ENSGALG00000008367 540.75 4352.34 midkine [Source:NCBI gene;Acc:423196]
15. RAN ENSGALG00000002569 540.75 4352.34 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
16. RPLP0 ENSGALG00000023294 526.23 4235.47 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. RPS8 ENSGALG00000010124 526.23 4235.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL15 ENSGALG00000011290 489.94 3943.39 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPL4 ENSGALG00000007711 468.16 3768.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. MT-CO1 MT-CO1 464.53 3738.87
21. RPSA 457.28 3680.52 ribosomal protein SA
22. GAPDH ENSGALG00000014442 439.13 3534.43 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. HBE 439.13 3534.43 hemoglobin subunit epsilon
24. RPL7A ENSGALG00000003197 435.50 3505.21 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RPL6 ENSGALG00000004818 428.24 3446.78 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
26. HBG1 HBG1 420.98 3388.35
27. TXN ENSGALG00000015704 420.98 3388.35 thioredoxin [Source:NCBI gene;Acc:396437]
28. TMSB4X ENSGALG00000026383 413.73 3329.99 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
29. RPS21 ENSGALG00000005338 402.84 3242.34 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPS4 RPS4 395.58 3183.91
31. RPL29 ENSGALG00000026978 381.06 3067.04 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. HMGN2 HMGN2 377.43 3037.83
33. RPS15A ENSGALG00000006771 377.43 3037.83 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. MT-ND4 MT-ND4 373.80 3008.61
35. MT-ND5 MT-ND5 366.55 2950.26
36. RPL27 ENSGALG00000002837 366.55 2950.26 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPLP2 ENSGALG00000034811 366.55 2950.26 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
38. RPS6 ENSGALG00000015082 352.03 2833.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPS12 ENSGALG00000013990 348.40 2804.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPS14 ENSGALG00000004588 337.51 2716.52 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
41. ENSGALG00000018386 ENSGALG00000018386 333.88 2687.30
42. MT-ND3 MT-ND3 333.88 2687.30
43. RPS28 ENSGALG00000024398 333.88 2687.30 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
44. HMGN5 ENSGALG00000007131 330.25 2658.09 high mobility group nucleosome binding domain 5, transcript variant X1
45. RPL23A ENSGALG00000003966 330.25 2658.09 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. RPL27A ENSGALG00000005948 330.25 2658.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
47. RPL32 ENSGALG00000027142 330.25 2658.09 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL5 ENSGALG00000005922 326.63 2628.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
49. CRHOA CRHOA 319.37 2570.52
50. RPL19 ENSGALG00000001658 319.37 2570.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
51. RPS29 ENSGALG00000012229 319.37 2570.52 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
52. SNRPD1 ENSGALG00000041334 319.37 2570.52 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
53. gga-mir-3527 gga-mir-3527 308.48 2482.87
54. RPL26 RPL26 301.22 2424.43
55. RPL36AL ENSGALG00000004952 301.22 2424.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. SET ENSGALG00000004701 293.96 2366.00 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
57. TCEB3 ENSGALG00000034625 293.96 2366.00 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
58. UBB ENSGALG00000004509 293.96 2366.00 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
59. PHB2 ENSGALG00000014567 290.33 2336.78 prohibitin 2 [Source:NCBI gene;Acc:771124]
60. RPS15 ENSGALG00000015195 286.70 2307.57 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. HNRNPDL ENSGALG00000023199 272.19 2190.78 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
62. MKI67 ENSGALG00000025996 272.19 2190.78 marker of proliferation Ki-67, transcript variant X3
63. RPL18A 272.19 2190.78 ribosomal protein L18a
64. RPS27A ENSGALG00000036790 264.93 2132.35 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
65. ENSGALG00000002696 ENSGALG00000002696 261.30 2103.13
66. ENSGALG00000028649 ENSGALG00000028649 261.30 2103.13
67. GNB2L1 ENSGALG00000000122 261.30 2103.13 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
68. RPL21 ENSGALG00000027035 261.30 2103.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. RPL37 ENSGALG00000014833 257.67 2073.91 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
70. RPL38 ENSGALG00000001465 257.67 2073.91 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
71. RPL35 ENSGALG00000035677 254.04 2044.69 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
72. RPS7 ENSGALG00000016392 254.04 2044.69 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
73. CIRBP ENSGALG00000030918 250.41 2015.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
74. RPL14 ENSGALG00000043379 250.41 2015.48 ribosomal protein L14
75. RPS2 ENSGALG00000005490 250.41 2015.48 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
76. STMN1 ENSGALG00000001475 250.41 2015.48 stathmin 1 [Source:NCBI gene;Acc:396057]
77. HSPA8 ENSGALG00000006512 246.78 1986.26 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
78. RPS25 ENSGALG00000007699 246.78 1986.26 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. RPS24 ENSGALG00000004871 239.53 1927.91 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. ATP5G3 235.90 1898.69 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. MBD3 ENSGALG00000001101 235.90 1898.69 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
82. RPL7 ENSGALG00000035252 235.90 1898.69 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. ENO1 ENSGALG00000002377 232.27 1869.47 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. RPL3 ENSGALG00000012172 232.27 1869.47 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. RPS13 ENSGALG00000006096 232.27 1869.47 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
86. PNRC1 ENSGALG00000015780 228.64 1840.26 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
87. PPIA ENSGALG00000028600 228.64 1840.26 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
88. RPL10A ENSGALG00000002644 228.64 1840.26 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. RPL12 ENSGALG00000008806 228.64 1840.26 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
90. RPL23 ENSGALG00000001634 228.64 1840.26 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
91. RPS16 ENSGALG00000026490 228.64 1840.26 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
92. RPS3 ENSGALG00000017330 228.64 1840.26 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
93. RPS11 ENSGALG00000017299 225.01 1811.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
94. HMGB2 ENSGALG00000010745 221.38 1781.82 high mobility group box 2 [Source:NCBI gene;Acc:396482]
95. NUCKS1 ENSGALG00000000708 221.38 1781.82 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
96. ANP32B ENSGALG00000037483 217.75 1752.61 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. DYL1 ENSGALG00000007153 214.12 1723.39 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
98. RPL13 ENSGALG00000006179 214.12 1723.39 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
99. EEF1B2 ENSGALG00000008590 210.49 1694.17 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
100. HSP90B1 ENSGALG00000033789 210.49 1694.17 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA