Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s38.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7418.10 59707.69
2. EEF1A EEF1A 1866.81 15025.80
3. RPS3A ENSGALG00000010077 1277.29 10280.81 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
4. RPS10 ENSGALG00000002813 1053.49 8479.46 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. MT-ATP6 MT-ATP6 1015.28 8171.91
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 1015.28 8171.91 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. ENSGALG00000018384 ENSGALG00000018384 982.53 7908.31
8. RPS23 ENSGALG00000015617 769.65 6194.85 ribosomal protein S23
9. RPL19 ENSGALG00000001658 600.43 4832.81 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
10. MT-CYB MT-CYB 578.60 4657.11
11. RAN ENSGALG00000002569 567.68 4569.21 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
12. RPLP1 ENSGALG00000030878 556.77 4481.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPL7A ENSGALG00000003197 545.85 4393.50 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
14. RPL8 ENSGALG00000016232 540.39 4349.56 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RPL15 ENSGALG00000011290 518.56 4173.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL4 ENSGALG00000007711 513.10 4129.90 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. MT-ND5 MT-ND5 502.18 4042.01
18. RPLP0 ENSGALG00000023294 502.18 4042.01 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
19. GAPDH ENSGALG00000014442 496.72 3998.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPS8 ENSGALG00000010124 491.26 3954.11 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPS6 ENSGALG00000015082 485.81 3910.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. PHB2 ENSGALG00000014567 474.89 3822.35 prohibitin 2 [Source:NCBI gene;Acc:771124]
23. RPL27A ENSGALG00000005948 474.89 3822.35 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. MT-CO1 MT-CO1 453.06 3646.64
25. TMSB4X ENSGALG00000026383 436.68 3514.80 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. RPL27 ENSGALG00000002837 425.76 3426.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
27. gga-mir-3533 ENSGALG00000027736 425.76 3426.91 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
28. ENSGALG00000002696 ENSGALG00000002696 420.30 3382.96
29. RPS4 RPS4 403.93 3251.20
30. ENSGALG00000018386 ENSGALG00000018386 387.55 3119.36
31. MT-ND4 MT-ND4 387.55 3119.36
32. RPL6 ENSGALG00000004818 387.55 3119.36 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. RPS28 ENSGALG00000024398 387.55 3119.36 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
34. SNRPD1 ENSGALG00000041334 387.55 3119.36 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
35. RPL26 RPL26 376.64 3031.55
36. RPS12 ENSGALG00000013990 365.72 2943.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
37. RPL5 ENSGALG00000005922 354.80 2855.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
38. RPSA 354.80 2855.76 ribosomal protein SA
39. RPL29 ENSGALG00000026978 349.34 2811.81 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL36AL ENSGALG00000004952 349.34 2811.81 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. gga-mir-3527 gga-mir-3527 349.34 2811.81
42. MDK ENSGALG00000008367 343.89 2767.94 midkine [Source:NCBI gene;Acc:423196]
43. RPS14 ENSGALG00000004588 343.89 2767.94 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
44. RPL14 ENSGALG00000043379 338.43 2724.00 ribosomal protein L14
45. TXN ENSGALG00000015704 338.43 2724.00 thioredoxin [Source:NCBI gene;Acc:396437]
46. CIRBP ENSGALG00000030918 327.51 2636.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
47. TCEB3 ENSGALG00000034625 316.59 2548.21 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
48. RPL21 ENSGALG00000027035 311.13 2504.26 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL32 ENSGALG00000027142 311.13 2504.26 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPL38 ENSGALG00000001465 311.13 2504.26 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
51. RPL7 ENSGALG00000035252 311.13 2504.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
52. RPS11 ENSGALG00000017299 311.13 2504.26 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. PSMC6 ENSGALG00000012408 305.68 2460.39 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
54. RPS15A ENSGALG00000006771 305.68 2460.39 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. ENSGALG00000028649 ENSGALG00000028649 300.22 2416.45
56. SET ENSGALG00000004701 278.38 2240.66 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
57. RPS2 ENSGALG00000005490 272.92 2196.71 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
58. RPL18A 267.47 2152.84 ribosomal protein L18a
59. RPL35 ENSGALG00000035677 267.47 2152.84 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
60. ANP32B ENSGALG00000037483 262.01 2108.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. NME2 ENSGALG00000002932 262.01 2108.90 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. RPS21 ENSGALG00000005338 262.01 2108.90 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
63. ENO1 ENSGALG00000002377 256.55 2064.95 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
64. H2AFZ ENSGALG00000014023 251.09 2021.00 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. RPL37 ENSGALG00000014833 251.09 2021.00 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. EEF1B2 ENSGALG00000008590 245.63 1977.06 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
67. RPS29 ENSGALG00000012229 245.63 1977.06 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
68. STMN1 ENSGALG00000001475 245.63 1977.06 stathmin 1 [Source:NCBI gene;Acc:396057]
69. HSP90B1 ENSGALG00000033789 240.17 1933.11 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
70. MBD3 ENSGALG00000001101 240.17 1933.11 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
71. MT-ND3 MT-ND3 240.17 1933.11
72. RPL23 ENSGALG00000001634 240.17 1933.11 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. RPS7 ENSGALG00000016392 240.17 1933.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. UBB ENSGALG00000004509 240.17 1933.11 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. RPL23A ENSGALG00000003966 234.72 1889.24 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
76. EIF2S1 ENSGALG00000009565 229.26 1845.30 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
77. HMGN5 ENSGALG00000007131 229.26 1845.30 high mobility group nucleosome binding domain 5, transcript variant X1
78. RPL12 ENSGALG00000008806 229.26 1845.30 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
79. RPS3 ENSGALG00000017330 229.26 1845.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. ENSGALG00000028992 ENSGALG00000028992 223.80 1801.35
81. RPS15 ENSGALG00000015195 223.80 1801.35 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
82. CNN3 ENSGALG00000005597 218.34 1757.40 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. FKBP4 ENSGALG00000014331 218.34 1757.40 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. MT-ND1 MT-ND1 218.34 1757.40
85. RPL13 ENSGALG00000006179 218.34 1757.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
86. RPL3 ENSGALG00000012172 218.34 1757.40 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
87. RPS13 ENSGALG00000006096 218.34 1757.40 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
88. HMGN2 HMGN2 212.88 1713.45
89. RPS16 ENSGALG00000026490 212.88 1713.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
90. EEF1D 207.42 1669.51 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. CRHOA CRHOA 201.96 1625.56
92. RPLP2 ENSGALG00000034811 201.96 1625.56 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. SLC25A6_1 ENSGALG00000016691 201.96 1625.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. BLMH ENSGALG00000004259 196.51 1581.69 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
95. HMGB1 ENSGALG00000042875 196.51 1581.69 high mobility group box 1 [Source:NCBI gene;Acc:395724]
96. HSPA8 ENSGALG00000006512 191.05 1537.75 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
97. MKI67 ENSGALG00000025996 191.05 1537.75 marker of proliferation Ki-67, transcript variant X3
98. OAZ OAZ 191.05 1537.75
99. PRDX1 ENSGALG00000010243 191.05 1537.75 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
100. RPS25 ENSGALG00000007699 191.05 1537.75 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA