Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s35.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4726.41 38041.30
2. MT-ATP6 MT-ATP6 2006.96 16153.35
3. EEF1A EEF1A 1465.64 11796.45
4. MT-CYB MT-CYB 1067.67 8593.32
5. RPS10 ENSGALG00000002813 917.89 7387.79 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPS3A ENSGALG00000010077 883.66 7112.29 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-ND5 MT-ND5 877.24 7060.61
8. gga-mir-3533 ENSGALG00000027736 866.54 6974.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 753.14 6061.77
10. ENSGALG00000018384 ENSGALG00000018384 725.33 5837.94
11. RPLP1 ENSGALG00000030878 639.74 5149.05 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. MT-CO1 MT-CO1 596.95 4804.65
13. RPLP0 ENSGALG00000023294 590.53 4752.98 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
14. GAPDH ENSGALG00000014442 586.25 4718.53 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS23 ENSGALG00000015617 562.72 4529.15 ribosomal protein S23
16. RPL4 ENSGALG00000007711 549.88 4425.80 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPS8 ENSGALG00000010124 485.69 3909.16 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL35A ENSGALG00000007611, ENSGALG00000041230 477.13 3840.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
19. RPL15 ENSGALG00000011290 453.60 3650.88 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL8 ENSGALG00000016232 453.60 3650.88 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL7A ENSGALG00000003197 442.90 3564.75 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. gga-mir-3527 gga-mir-3527 438.62 3530.31
23. RPS12 ENSGALG00000013990 397.97 3203.13 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
24. ANP32B ENSGALG00000037483 389.41 3134.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
25. HMGN2 HMGN2 389.41 3134.23
26. RPL6 ENSGALG00000004818 389.41 3134.23 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
27. RAN ENSGALG00000002569 370.15 2979.21 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. RPS4 RPS4 363.73 2927.54
29. CIRBP ENSGALG00000030918 359.46 2893.17 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
30. MDK ENSGALG00000008367 359.46 2893.17 midkine [Source:NCBI gene;Acc:423196]
31. RPSA 359.46 2893.17 ribosomal protein SA
32. RPS6 ENSGALG00000015082 357.32 2875.95 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
33. RPL27A ENSGALG00000005948 353.04 2841.50 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. PNRC1 ENSGALG00000015780 344.48 2772.60 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
35. ENSGALG00000018386 ENSGALG00000018386 338.06 2720.93
36. PHB2 ENSGALG00000014567 329.50 2652.04 prohibitin 2 [Source:NCBI gene;Acc:771124]
37. SNRPD1 ENSGALG00000041334 323.08 2600.36 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
38. RPL26 RPL26 318.80 2565.92
39. RPL5 ENSGALG00000005922 318.80 2565.92 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
40. RPS14 ENSGALG00000004588 318.80 2565.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
41. HBZ ENSGALG00000023740 310.24 2497.02 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
42. RPS15 ENSGALG00000015195 310.24 2497.02 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. RPL21 ENSGALG00000027035 303.83 2445.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPS11 ENSGALG00000017299 303.83 2445.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. RPL23A ENSGALG00000003966 299.55 2410.98 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. RPS2 ENSGALG00000005490 299.55 2410.98 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
47. RPS28 ENSGALG00000024398 299.55 2410.98 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
48. RPL32 ENSGALG00000027142 295.27 2376.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. ENSGALG00000002696 ENSGALG00000002696 293.13 2359.31
50. H3-IX H3-IX 290.99 2342.08
51. MT-ND1 MT-ND1 288.85 2324.86
52. TXN ENSGALG00000015704 288.85 2324.86 thioredoxin [Source:NCBI gene;Acc:396437]
53. RPL27 ENSGALG00000002837 286.71 2307.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. TMSB4X ENSGALG00000026383 286.71 2307.63 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
55. RPL19 ENSGALG00000001658 280.29 2255.96 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
56. RPLP2 ENSGALG00000034811 271.73 2187.06 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
57. MBD3 ENSGALG00000001101 269.59 2169.84 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
58. STMN1 ENSGALG00000001475 267.45 2152.62 stathmin 1 [Source:NCBI gene;Acc:396057]
59. MT-ND3 MT-ND3 265.31 2135.39
60. RPL18A 265.31 2135.39 ribosomal protein L18a
61. PPIA ENSGALG00000028600 263.17 2118.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. RPL13 ENSGALG00000006179 263.17 2118.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. RPS21 ENSGALG00000005338 263.17 2118.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
64. RPL12 ENSGALG00000008806 256.75 2066.50 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
65. RPS29 ENSGALG00000012229 254.61 2049.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. RPL29 ENSGALG00000026978 250.33 2014.82 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
67. ATP5G3 243.92 1963.23 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. RPS15A ENSGALG00000006771 243.92 1963.23 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. ENSGALG00000028649 ENSGALG00000028649 239.64 1928.78
70. RPL36AL ENSGALG00000004952 235.36 1894.33 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
71. RPL37 ENSGALG00000014833 233.22 1877.11 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
72. CRHOA CRHOA 231.08 1859.89
73. MT-ND6 MT-ND6 231.08 1859.89
74. SET ENSGALG00000004701 231.08 1859.89 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
75. RPS13 ENSGALG00000006096 228.94 1842.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. HSPA8 ENSGALG00000006512 224.66 1808.21 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
77. RPL10A ENSGALG00000002644 224.66 1808.21 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. RPL14 ENSGALG00000043379 222.52 1790.99 ribosomal protein L14
79. TGFB2 ENSGALG00000009612 220.38 1773.77 transforming growth factor beta 2 [Source:NCBI gene;Acc:421352]
80. HSP90B1 ENSGALG00000033789 218.24 1756.54 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
81. NUCKS1 ENSGALG00000000708 218.24 1756.54 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
82. MARCKSL1 ENSGALG00000032335 213.96 1722.09 MARCKS like 1 [Source:NCBI gene;Acc:770764]
83. MYL12A ENSGALG00000014854 209.68 1687.64 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
84. RPL23 ENSGALG00000001634 209.68 1687.64 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. RPS16 ENSGALG00000026490 209.68 1687.64 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
86. BLMH ENSGALG00000004259 207.54 1670.42 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
87. FTH FTH 207.54 1670.42
88. EIF4G2 ENSGALG00000005587 205.40 1653.20 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
89. RPS27A ENSGALG00000036790 205.40 1653.20 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
90. NME2 ENSGALG00000002932 203.26 1635.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
91. SOX9 ENSGALG00000004386 201.12 1618.75 SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
92. GNB2L1 ENSGALG00000000122 198.98 1601.52 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
93. RPL24 ENSGALG00000015339 196.84 1584.30 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
94. RPL38 ENSGALG00000001465 196.84 1584.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
95. RPS25 ENSGALG00000007699 196.84 1584.30 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
96. RPS7 ENSGALG00000016392 194.70 1567.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
97. RUNX1T1 ENSGALG00000033091 194.70 1567.08 RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
98. TCEB3 ENSGALG00000034625 194.70 1567.08 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
99. CTNNB1 ENSGALG00000037203 190.43 1532.71 catenin beta 1 [Source:NCBI gene;Acc:395964]
100. EIF5A2 ENSGALG00000009309 190.43 1532.71 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA