Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s33.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4961.74 39941.11
2. MT-ATP6 MT-ATP6 1690.72 13609.99
3. EEF1A EEF1A 1243.98 10013.81
4. ANXA1 ENSGALG00000015148 1103.17 8880.32 annexin A1 [Source:NCBI gene;Acc:404271]
5. RPS3A ENSGALG00000010077 967.43 7787.64 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 824.59 6637.80 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPLP0 ENSGALG00000023294 750.64 6042.52 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPLP1 ENSGALG00000030878 744.56 5993.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. gga-mir-3533 ENSGALG00000027736 739.50 5952.84 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-CYB MT-CYB 721.26 5806.01
11. GAPDH ENSGALG00000014442 710.12 5716.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL4 ENSGALG00000007711 702.02 5651.13 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS10 ENSGALG00000002813 649.34 5227.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. MT-ND5 MT-ND5 624.02 5023.25
15. RPS23 ENSGALG00000015617 619.96 4990.57 ribosomal protein S23
16. RPS8 ENSGALG00000010124 597.68 4811.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. MT-CO1 MT-CO1 591.60 4762.27
18. MT-ND4 MT-ND4 577.42 4648.13
19. TXN ENSGALG00000015704 562.22 4525.77 thioredoxin [Source:NCBI gene;Acc:396437]
20. RPL8 ENSGALG00000016232 553.10 4452.36 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. HMGB2 ENSGALG00000010745 540.95 4354.55 high mobility group box 2 [Source:NCBI gene;Acc:396482]
22. TMSB4X ENSGALG00000026383 534.87 4305.61 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. ENSGALG00000018384 ENSGALG00000018384 533.86 4297.48
24. MDK ENSGALG00000008367 514.61 4142.52 midkine [Source:NCBI gene;Acc:423196]
25. RPL7A ENSGALG00000003197 479.15 3857.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS12 ENSGALG00000013990 471.05 3791.87 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPL15 ENSGALG00000011290 457.88 3685.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RAN ENSGALG00000002569 449.78 3620.65 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
29. RPL27 ENSGALG00000002837 415.34 3343.41 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPSA 415.34 3343.41 ribosomal protein SA
31. RPS4 RPS4 390.01 3139.51
32. PHB2 ENSGALG00000014567 383.93 3090.57 prohibitin 2 [Source:NCBI gene;Acc:771124]
33. RPL6 ENSGALG00000004818 366.71 2951.95 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
34. RPS28 ENSGALG00000024398 366.71 2951.95 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
35. SNRPD1 ENSGALG00000041334 360.63 2903.01 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. RPL21 ENSGALG00000027035 358.61 2886.75 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. RPL27A ENSGALG00000005948 355.57 2862.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPL23A ENSGALG00000003966 352.53 2837.80 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
39. RPS6 ENSGALG00000015082 351.52 2829.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
40. ENSGALG00000002696 ENSGALG00000002696 346.45 2788.86
41. ANP32B ENSGALG00000037483 334.29 2690.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
42. RPL19 ENSGALG00000001658 332.27 2674.71 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
43. RPL26 RPL26 328.22 2642.11
44. gga-mir-3527 gga-mir-3527 328.22 2642.11
45. RPS14 ENSGALG00000004588 319.10 2568.70 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
46. PPIA ENSGALG00000028600 314.03 2527.88 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
47. CIRBP ENSGALG00000030918 307.96 2479.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
48. RPS29 ENSGALG00000012229 307.96 2479.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. RPS15 ENSGALG00000015195 306.94 2470.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL5 ENSGALG00000005922 304.92 2454.55 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
51. RPLP2 ENSGALG00000034811 304.92 2454.55 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
52. RPL36AL ENSGALG00000004952 296.81 2389.27 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
53. CRHOA CRHOA 294.79 2373.01
54. RPL13 ENSGALG00000006179 293.77 2364.80 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
55. RPL37 ENSGALG00000014833 292.76 2356.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. PNRC1 ENSGALG00000015780 290.73 2340.32 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
57. RPS21 ENSGALG00000005338 289.72 2332.19 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
58. RPL32 ENSGALG00000027142 285.67 2299.59 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPS2 ENSGALG00000005490 276.55 2226.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
60. RPS15A ENSGALG00000006771 265.41 2136.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. MT-ND3 MT-ND3 262.37 2112.03
62. RPL12 ENSGALG00000008806 261.36 2103.90 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. ENO1 ENSGALG00000002377 257.31 2071.30 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
64. RPL38 ENSGALG00000001465 257.31 2071.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
65. RPS7 ENSGALG00000016392 255.28 2054.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. ATP5G3 254.27 2046.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. RPL29 ENSGALG00000026978 254.27 2046.83 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
68. ENSGALG00000018386 ENSGALG00000018386 253.25 2038.62
69. GNB2L1 ENSGALG00000000122 252.24 2030.49 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
70. MT-ND1 MT-ND1 247.18 1989.75
71. HMGN2 HMGN2 240.08 1932.60
72. FTH FTH 235.02 1891.87
73. H3-IX H3-IX 234.01 1883.74
74. HBZ ENSGALG00000023740 234.01 1883.74 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. MT-ND6 MT-ND6 234.01 1883.74
76. STMN1 ENSGALG00000001475 232.99 1875.53 stathmin 1 [Source:NCBI gene;Acc:396057]
77. UBB ENSGALG00000004509 229.95 1851.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. RPL18A 226.91 1826.58 ribosomal protein L18a
79. RPL23 ENSGALG00000001634 223.88 1802.19 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. PSMC6 ENSGALG00000012408 222.86 1793.98 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
81. RPS3 ENSGALG00000017330 219.82 1769.51 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
82. TCEB3 ENSGALG00000034625 216.78 1745.04 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
83. RPL14 ENSGALG00000043379 214.76 1728.78 ribosomal protein L14
84. SET ENSGALG00000004701 212.73 1712.44 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
85. MBD3 ENSGALG00000001101 211.72 1704.31 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
86. CNN3 ENSGALG00000005597 210.71 1696.18 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
87. ENSGALG00000028649 ENSGALG00000028649 210.71 1696.18
88. RPS13 ENSGALG00000006096 210.71 1696.18 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
89. EEF1B2 ENSGALG00000008590 209.69 1687.97 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
90. RPS25 ENSGALG00000007699 209.69 1687.97 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. HMGN5 ENSGALG00000007131 207.67 1671.71 high mobility group nucleosome binding domain 5, transcript variant X1
92. NUCKS1 ENSGALG00000000708 206.65 1663.50 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
93. ATP6V1G1 ENSGALG00000007190 204.63 1647.23 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
94. RPL3 ENSGALG00000012172 198.55 1598.29 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. HSP90B1 ENSGALG00000033789 197.54 1590.16 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
96. SSR1 ENSGALG00000012798 194.50 1565.69 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
97. RPS27A ENSGALG00000036790 193.49 1557.56 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
98. TPT1 ENSGALG00000028872 192.47 1549.35 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. EEF1D 191.46 1541.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. ITGB1BP3 ENSGALG00000030120 191.46 1541.22 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA