Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s30.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5821.33 46858.11
2. MT-ATP6 MT-ATP6 2409.29 19393.30
3. EEF1A EEF1A 1463.66 11781.56
4. MT-ND5 MT-ND5 1333.40 10733.05
5. GAL10 GAL10 1258.53 10130.39
6. MT-CYB MT-CYB 1195.34 9621.75
7. RPS3A ENSGALG00000010077 881.14 7092.63 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
8. MT-ND4 MT-ND4 821.85 6615.38
9. GAPDH ENSGALG00000014442 765.59 6162.53 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. ENSGALG00000018384 ENSGALG00000018384 716.25 5765.37
11. MT-CO1 MT-CO1 712.36 5734.06
12. RPLP1 ENSGALG00000030878 704.13 5667.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 688.99 5545.94 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPLP0 ENSGALG00000023294 646.57 5204.49 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. gga-mir-3533 ENSGALG00000027736 614.98 4950.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. RPS10 ENSGALG00000002813 613.25 4936.28 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
17. RPL4 ENSGALG00000007711 583.39 4695.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPS23 ENSGALG00000015617 535.35 4309.24 ribosomal protein S23
19. gga-mir-3527 gga-mir-3527 525.40 4229.15
20. RPL15 ENSGALG00000011290 516.31 4155.98 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL8 ENSGALG00000016232 511.55 4117.66 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. TXN ENSGALG00000015704 496.83 3999.17 thioredoxin [Source:NCBI gene;Acc:396437]
23. RPS8 ENSGALG00000010124 492.07 3960.86 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
24. RPS4 RPS4 432.78 3483.61
25. RPL7A ENSGALG00000003197 418.93 3372.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. MT-ND1 MT-ND1 414.17 3333.81
27. RPSA 408.11 3285.03 ribosomal protein SA
28. RPL19 ENSGALG00000001658 405.08 3260.64 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. PHB2 ENSGALG00000014567 389.07 3131.77 prohibitin 2 [Source:NCBI gene;Acc:771124]
30. RPL27A ENSGALG00000005948 377.38 3037.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPS28 ENSGALG00000024398 377.38 3037.68 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
32. MDK ENSGALG00000008367 370.03 2978.51 midkine [Source:NCBI gene;Acc:423196]
33. RPL32 ENSGALG00000027142 369.59 2974.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. SNRPD1 ENSGALG00000041334 361.80 2912.27 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
35. ANXA1 ENSGALG00000015148 360.51 2901.88 annexin A1 [Source:NCBI gene;Acc:404271]
36. ENSGALG00000018386 ENSGALG00000018386 355.31 2860.03
37. RPS6 ENSGALG00000015082 343.63 2766.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
38. RPS12 ENSGALG00000013990 339.30 2731.16 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
39. PPIA ENSGALG00000028600 338.87 2727.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPL6 ENSGALG00000004818 335.84 2703.30 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
41. RPL27 ENSGALG00000002837 334.97 2696.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPS11 ENSGALG00000017299 331.51 2668.45 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPS29 ENSGALG00000012229 331.51 2668.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. RAN ENSGALG00000002569 326.75 2630.14 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPL23A ENSGALG00000003966 326.32 2626.67 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. ENSGALG00000002696 ENSGALG00000002696 316.80 2550.04
47. GNB2L1 ENSGALG00000000122 310.74 2501.26 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
48. MT-ND3 MT-ND3 310.30 2497.72
49. RPLP2 ENSGALG00000034811 302.95 2438.56 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
50. MT-ND6 MT-ND6 302.08 2431.56
51. ENSGALG00000028649 ENSGALG00000028649 298.62 2403.71
52. RPS2 ENSGALG00000005490 288.23 2320.07 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
53. ANP32B ENSGALG00000037483 285.20 2295.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
54. RPL38 ENSGALG00000001465 284.34 2288.76 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. TCEB3 ENSGALG00000034625 283.90 2285.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
56. RPL5 ENSGALG00000005922 282.17 2271.29 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
57. RPL29 ENSGALG00000026978 281.74 2267.83 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
58. RPL13 ENSGALG00000006179 279.58 2250.45 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
59. RPL26 RPL26 279.14 2246.90
60. RPL36AL ENSGALG00000004952 279.14 2246.90 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
61. RPL21 ENSGALG00000027035 275.25 2215.59 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. HMGN2 HMGN2 273.95 2205.13
63. CIRBP ENSGALG00000030918 272.22 2191.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPS21 ENSGALG00000005338 271.79 2187.74 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
65. RPS15 ENSGALG00000015195 271.35 2184.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
66. H3-IX H3-IX 267.89 2156.35
67. RPS14 ENSGALG00000004588 264.86 2131.96 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS7 ENSGALG00000016392 251.01 2020.48 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
69. ENO1 ENSGALG00000002377 248.85 2003.09 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. CRHOA CRHOA 247.55 1992.62
71. RPS13 ENSGALG00000006096 247.55 1992.62 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPL12 ENSGALG00000008806 244.95 1971.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. HMGN5 ENSGALG00000007131 242.79 1954.31 high mobility group nucleosome binding domain 5, transcript variant X1
74. HBZ ENSGALG00000023740 241.49 1943.85 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. ATP5G3 238.89 1922.92 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. UBB ENSGALG00000004509 236.73 1905.53 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. RPL37 ENSGALG00000014833 235.87 1898.61 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. RPS15A ENSGALG00000006771 232.40 1870.68 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
79. RPL18A 230.24 1853.29 ribosomal protein L18a
80. STMN1 ENSGALG00000001475 228.51 1839.36 stathmin 1 [Source:NCBI gene;Acc:396057]
81. TMSB4X ENSGALG00000026383 228.08 1835.90 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
82. RPS16 ENSGALG00000026490 223.31 1797.51 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
83. MBD3 ENSGALG00000001101 222.45 1790.59 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
84. RPL23 ENSGALG00000001634 220.29 1773.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. RPS20 ENSGALG00000014432 218.55 1759.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. SET ENSGALG00000004701 214.66 1727.88 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
87. HSPA8 ENSGALG00000006512 213.36 1717.42 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
88. NME2 ENSGALG00000002932 212.50 1710.49 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
89. NUCKS1 ENSGALG00000000708 211.63 1703.49 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
90. RPL3 ENSGALG00000012172 210.76 1696.49 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. RPL14 ENSGALG00000043379 209.90 1689.57 ribosomal protein L14
92. FTH FTH 207.30 1668.64
93. RPL35 ENSGALG00000035677 207.30 1668.64 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
94. EEF1B2 ENSGALG00000008590 206.00 1658.17 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
95. PNRC1 ENSGALG00000015780 202.54 1630.32 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
96. ALDOC ENSGALG00000026077 191.72 1543.23 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
97. EIF5A2 ENSGALG00000009309 190.86 1536.31 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
98. SLC25A6_1 ENSGALG00000016691 190.86 1536.31 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. RPL7 ENSGALG00000035252 187.83 1511.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
100. PSMC6 ENSGALG00000012408 186.53 1501.45 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA