Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s29.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4901.16 39456.12
2. MT-ATP6 MT-ATP6 2667.93 21477.81
3. GAL10 GAL10 1369.46 11024.65
4. MT-CYB MT-CYB 1250.93 10070.44
5. MT-ND5 MT-ND5 1223.73 9851.47
6. EEF1A EEF1A 1056.10 8501.99
7. MT-CO1 MT-CO1 994.49 8006.01
8. RPS3A ENSGALG00000010077 954.46 7683.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. MT-ND4 MT-ND4 827.81 6664.17
10. ENSGALG00000018384 ENSGALG00000018384 792.15 6377.10
11. gga-mir-3533 ENSGALG00000027736 733.05 5901.32 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 732.73 5898.74 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 709.59 5712.46 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPLP0 ENSGALG00000023294 674.88 5433.03 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPL4 ENSGALG00000007711 627.97 5055.39 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPLP1 ENSGALG00000030878 621.09 5000.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
17. RPS23 ENSGALG00000015617 616.40 4962.24 ribosomal protein S23
18. RPS10 ENSGALG00000002813 604.83 4869.10 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
19. RPS8 ENSGALG00000010124 573.87 4619.86 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. TMSB4X ENSGALG00000026383 543.22 4373.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
21. gga-mir-3527 gga-mir-3527 527.58 4247.21
22. RAN ENSGALG00000002569 479.73 3862.00 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
23. MT-ND1 MT-ND1 475.67 3829.32
24. RPL8 ENSGALG00000016232 472.54 3804.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. MDK ENSGALG00000008367 468.79 3773.93 midkine [Source:NCBI gene;Acc:423196]
26. RPL15 ENSGALG00000011290 458.78 3693.35 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL7A ENSGALG00000003197 458.78 3693.35 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. ENSGALG00000018386 ENSGALG00000018386 441.58 3554.88
29. RPS4 RPS4 435.01 3501.99
30. HMGB2 ENSGALG00000010745 432.51 3481.86 high mobility group box 2 [Source:NCBI gene;Acc:396482]
31. RPS12 ENSGALG00000013990 430.63 3466.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. TXN ENSGALG00000015704 411.87 3315.70 thioredoxin [Source:NCBI gene;Acc:396437]
33. SNRPD1 ENSGALG00000041334 381.53 3071.46 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
34. ANXA1 ENSGALG00000015148 371.53 2990.95 annexin A1 [Source:NCBI gene;Acc:404271]
35. RPSA 369.96 2978.31 ribosomal protein SA
36. RPL23A ENSGALG00000003966 368.71 2968.25 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
37. HBZ ENSGALG00000023740 367.46 2958.19 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
38. PHB2 ENSGALG00000014567 363.40 2925.50 prohibitin 2 [Source:NCBI gene;Acc:771124]
39. RPL19 ENSGALG00000001658 361.21 2907.87 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
40. RPL27 ENSGALG00000002837 360.27 2900.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL27A ENSGALG00000005948 358.08 2882.67 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. CIRBP ENSGALG00000030918 342.44 2756.77 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
43. MT-ND6 MT-ND6 337.44 2716.51
44. ENSGALG00000002696 ENSGALG00000002696 332.44 2676.26
45. RPS6 ENSGALG00000015082 330.56 2661.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. ANP32B ENSGALG00000037483 329.93 2656.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
47. RPL26 RPL26 326.81 2630.94
48. RPS28 ENSGALG00000024398 322.74 2598.17 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
49. RPLP2 ENSGALG00000034811 317.42 2555.35 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
50. RPL6 ENSGALG00000004818 315.24 2537.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
51. RPS29 ENSGALG00000012229 313.98 2527.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
52. RPL21 ENSGALG00000027035 303.04 2439.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPL13 ENSGALG00000006179 301.79 2429.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
54. RPS21 ENSGALG00000005338 300.22 2416.88 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
55. RPS15 ENSGALG00000015195 295.53 2379.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
56. RPL29 ENSGALG00000026978 291.15 2343.86 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
57. RPS2 ENSGALG00000005490 288.97 2326.31 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
58. ENSGALG00000028649 ENSGALG00000028649 288.34 2321.24
59. RPL5 ENSGALG00000005922 286.78 2308.68 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. RPL32 ENSGALG00000027142 278.02 2238.16 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. PPIA ENSGALG00000028600 277.71 2235.67 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. CRHOA CRHOA 276.14 2223.03
63. RPL36AL ENSGALG00000004952 269.89 2172.71 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. RPS14 ENSGALG00000004588 268.64 2162.65 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. H3-IX H3-IX 261.13 2102.19
66. HMGN5 ENSGALG00000007131 258.63 2082.07 high mobility group nucleosome binding domain 5, transcript variant X1
67. ATP5G3 255.82 2059.44 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. RPS15A ENSGALG00000006771 252.69 2034.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
69. ENO1 ENSGALG00000002377 250.19 2014.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPL18A 248.94 2004.06 ribosomal protein L18a
71. HMGN2 HMGN2 242.99 1956.16
72. RPL37 ENSGALG00000014833 241.74 1946.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPL14 ENSGALG00000043379 237.68 1913.41 ribosomal protein L14
74. RPL12 ENSGALG00000008806 235.80 1898.28 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPS25 ENSGALG00000007699 233.92 1883.14 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
76. PNRC1 ENSGALG00000015780 230.17 1852.95 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
77. GNB2L1 ENSGALG00000000122 229.86 1850.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
78. MYL12A ENSGALG00000014854 229.55 1847.96 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
79. HSPA8 ENSGALG00000006512 228.92 1842.89 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
80. RPS7 ENSGALG00000016392 228.30 1837.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. MT-ND3 MT-ND3 227.36 1830.33
82. RPS11 ENSGALG00000017299 227.04 1827.75 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
83. SET ENSGALG00000004701 224.23 1805.13 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
84. RPL23 ENSGALG00000001634 222.35 1790.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. GPC4 ENSGALG00000006080 219.85 1769.87 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
86. ALDOC ENSGALG00000026077 216.41 1742.18 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. RPL38 ENSGALG00000001465 212.97 1714.49 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
88. RPL35 ENSGALG00000035677 209.84 1689.29 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
89. UBB ENSGALG00000004509 208.59 1679.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RPS16 ENSGALG00000026490 204.53 1646.54 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
91. RPS13 ENSGALG00000006096 204.22 1644.05 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
92. RPL7 ENSGALG00000035252 200.77 1616.27 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
93. EEF1B2 ENSGALG00000008590 200.46 1613.78 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
94. FTH FTH 194.52 1565.96
95. MBD3 ENSGALG00000001101 193.58 1558.39 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
96. GPX1 ENSGALG00000028204 192.02 1545.83 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
97. HSP90B1 ENSGALG00000033789 190.77 1535.77 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
98. TCEB3 ENSGALG00000034625 190.77 1535.77 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
99. SLC25A6_1 ENSGALG00000016691 189.83 1528.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. NUCKS1 ENSGALG00000000708 188.58 1518.14 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA