Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s25.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5560.76 44758.18
2. MT-ATP6 MT-ATP6 2205.25 17749.91
3. GAL10 GAL10 1999.02 16089.98
4. EEF1A EEF1A 1586.54 12769.95
5. ENSGALG00000018384 ENSGALG00000018384 1065.78 8578.39
6. MT-ND5 MT-ND5 984.46 7923.85
7. MT-CYB MT-CYB 877.52 7063.10
8. RPS3A ENSGALG00000010077 855.50 6885.86 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 803.38 6466.35 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. GAPDH ENSGALG00000014442 740.48 5960.07 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. gga-mir-3533 ENSGALG00000027736 738.23 5941.96 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPS10 ENSGALG00000002813 723.85 5826.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPLP1 ENSGALG00000030878 705.43 5677.96 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. MT-ND4 MT-ND4 691.50 5565.84
15. MT-CO1 MT-CO1 665.89 5359.70
16. RPS23 ENSGALG00000015617 625.45 5034.20 ribosomal protein S23
17. RPL4 ENSGALG00000007711 623.65 5019.72 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPLP0 ENSGALG00000023294 594.45 4784.69 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
19. RPS8 ENSGALG00000010124 557.60 4488.08 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPL8 ENSGALG00000016232 534.24 4300.06 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL15 ENSGALG00000011290 518.51 4173.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPSA 482.12 3880.55 ribosomal protein SA
23. RAN ENSGALG00000002569 445.72 3587.57 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
24. TMSB4X ENSGALG00000026383 443.93 3573.16 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. TXN ENSGALG00000015704 436.74 3515.29 thioredoxin [Source:NCBI gene;Acc:396437]
26. RPL7A ENSGALG00000003197 434.04 3493.56 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
27. RPS4 RPS4 420.56 3385.06
28. RPL19 ENSGALG00000001658 381.92 3074.05 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. PHB2 ENSGALG00000014567 374.73 3016.18 prohibitin 2 [Source:NCBI gene;Acc:771124]
30. gga-mir-3527 gga-mir-3527 371.59 2990.90
31. RPL27 ENSGALG00000002837 368.89 2969.17 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
32. RPL6 ENSGALG00000004818 361.70 2911.30 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. SNRPD1 ENSGALG00000041334 359.45 2893.19 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
34. PPIA ENSGALG00000028600 355.86 2864.29 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
35. MDK ENSGALG00000008367 352.27 2835.40 midkine [Source:NCBI gene;Acc:423196]
36. RPS28 ENSGALG00000024398 352.27 2835.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
37. RPLP2 ENSGALG00000034811 350.02 2817.29 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
38. RPL27A ENSGALG00000005948 348.67 2806.42 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL32 ENSGALG00000027142 344.18 2770.28 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. ENSGALG00000002696 ENSGALG00000002696 336.99 2712.41
41. RPS12 ENSGALG00000013990 332.05 2672.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. RPS6 ENSGALG00000015082 328.90 2647.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPL26 RPL26 328.45 2643.67
44. RPL23A ENSGALG00000003966 327.55 2636.43 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
45. RPL5 ENSGALG00000005922 320.36 2578.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
46. CIRBP ENSGALG00000030918 317.67 2556.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
47. RPS14 ENSGALG00000004588 315.42 2538.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
48. RPL36AL ENSGALG00000004952 313.17 2520.68 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
49. RPL13 ENSGALG00000006179 308.68 2484.54 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
50. RPS2 ENSGALG00000005490 305.99 2462.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
51. RPL29 ENSGALG00000026978 304.19 2448.40 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
52. ENSGALG00000018386 ENSGALG00000018386 302.84 2437.54
53. RPL21 ENSGALG00000027035 299.25 2408.64 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. HMGB2 ENSGALG00000010745 298.80 2405.02 high mobility group box 2 [Source:NCBI gene;Acc:396482]
55. ENSGALG00000028649 ENSGALG00000028649 294.75 2372.42
56. RPS29 ENSGALG00000012229 292.96 2358.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. HSPA8 ENSGALG00000006512 283.07 2278.41 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
58. RPS21 ENSGALG00000005338 282.62 2274.79 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
59. GNB2L1 ENSGALG00000000122 281.72 2267.55 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
60. HMGN2 HMGN2 279.48 2249.52
61. RPS11 ENSGALG00000017299 279.03 2245.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
62. MT-ND1 MT-ND1 275.88 2220.54
63. RPL37 ENSGALG00000014833 275.43 2216.92 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. ATP5G3 274.98 2213.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. ANP32B ENSGALG00000037483 268.69 2162.67 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. RPS13 ENSGALG00000006096 268.24 2159.05 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
67. NME2 ENSGALG00000002932 260.60 2097.55 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
68. CRHOA CRHOA 257.91 2075.90
69. RPL14 ENSGALG00000043379 257.91 2075.90 ribosomal protein L14
70. RPL18A 252.07 2028.89 ribosomal protein L18a
71. RPS7 ENSGALG00000016392 252.07 2028.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. MBD3 ENSGALG00000001101 250.27 2014.41 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
73. MT-ND3 MT-ND3 248.47 1999.92
74. RPL12 ENSGALG00000008806 247.12 1989.05 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPS15 ENSGALG00000015195 247.12 1989.05 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
76. RPS25 ENSGALG00000007699 246.23 1981.89 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
77. RPS15A ENSGALG00000006771 245.33 1974.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. HMGN5 ENSGALG00000007131 243.08 1956.53 high mobility group nucleosome binding domain 5, transcript variant X1
79. RPL23 ENSGALG00000001634 240.39 1934.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. H3-IX H3-IX 230.05 1851.66
81. NCL ENSGALG00000032930 229.15 1844.41 nucleolin [Source:NCBI gene;Acc:396201]
82. RPL38 ENSGALG00000001465 229.15 1844.41 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
83. UBB ENSGALG00000004509 228.25 1837.17 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
84. SET ENSGALG00000004701 225.56 1815.52 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
85. MT-ND6 MT-ND6 221.96 1786.54
86. STMN1 ENSGALG00000001475 221.96 1786.54 stathmin 1 [Source:NCBI gene;Acc:396057]
87. RPS3 ENSGALG00000017330 221.51 1782.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
88. RPS16 ENSGALG00000026490 220.62 1775.76 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
89. ANXA1 ENSGALG00000015148 216.57 1743.16 annexin A1 [Source:NCBI gene;Acc:404271]
90. RPL35 ENSGALG00000035677 214.77 1728.67 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
91. GPX1 ENSGALG00000028204 212.53 1710.64 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
92. TCEB3 ENSGALG00000034625 211.63 1703.40 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. ALDOC ENSGALG00000026077 209.38 1685.29 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
94. EEF1B2 ENSGALG00000008590 208.03 1674.42 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
95. NUCKS1 ENSGALG00000000708 205.34 1652.77 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
96. ENO1 ENSGALG00000002377 203.54 1638.28 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
97. RPL3 ENSGALG00000012172 194.11 1562.38 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. RPL24 ENSGALG00000015339 192.31 1547.89 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
99. RPL7 ENSGALG00000035252 188.71 1518.91 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
100. EEF1D 182.87 1471.91 eukaryotic translation elongation factor 1 delta, transcript variant X13
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA