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Experiment Chicken_E4_posterior_slice_1, section s20.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5923.91 47682.52
2. MT-ATP6 MT-ATP6 1958.07 15760.83
3. EEF1A EEF1A 1414.78 11387.80
4. ENSGALG00000018384 ENSGALG00000018384 1103.72 8884.02
5. MT-ND5 MT-ND5 1031.73 8304.56
6. RPS3A ENSGALG00000010077 950.33 7649.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-CYB MT-CYB 917.76 7387.20
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 882.63 7104.43 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPLP1 ENSGALG00000030878 861.21 6932.02 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. gga-mir-3533 ENSGALG00000027736 787.51 6338.80 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. RPS10 ENSGALG00000002813 748.09 6021.50 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. MT-CO1 MT-CO1 664.11 5345.53
13. RPS23 ENSGALG00000015617 651.26 5242.10 ribosomal protein S23
14. RPLP0 ENSGALG00000023294 638.41 5138.67 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. ENSGALG00000018386 ENSGALG00000018386 610.13 4911.04
16. GAPDH ENSGALG00000014442 610.13 4911.04 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MT-ND4 MT-ND4 600.70 4835.13
18. RPL4 ENSGALG00000007711 592.99 4773.07 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
19. RPL8 ENSGALG00000016232 563.86 4538.60 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS8 ENSGALG00000010124 541.58 4359.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPL15 ENSGALG00000011290 502.16 4041.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL7A ENSGALG00000003197 473.02 3807.42 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. TMSB4X ENSGALG00000026383 461.02 3710.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. MDK ENSGALG00000008367 435.32 3503.96 midkine [Source:NCBI gene;Acc:423196]
25. RPL6 ENSGALG00000004818 427.60 3441.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
26. gga-mir-3527 gga-mir-3527 421.61 3393.61
27. RPS6 ENSGALG00000015082 404.47 3255.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPS4 RPS4 400.18 3221.11
29. RPS28 ENSGALG00000024398 398.47 3207.35 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
30. RPL27A ENSGALG00000005948 388.19 3124.61 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. RPL19 ENSGALG00000001658 380.47 3062.47 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPL32 ENSGALG00000027142 377.05 3034.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. RPSA 367.62 2959.03 ribosomal protein SA
34. RPS12 ENSGALG00000013990 366.76 2952.11 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. SNRPD1 ENSGALG00000041334 366.76 2952.11 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. RPL21 ENSGALG00000027035 364.19 2931.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
37. RPL26 RPL26 360.76 2903.82
38. RPS11 ENSGALG00000017299 351.34 2827.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. HMGN2 HMGN2 348.77 2807.31
40. RAN ENSGALG00000002569 347.05 2793.46 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
41. TXN ENSGALG00000015704 345.34 2779.70 thioredoxin [Source:NCBI gene;Acc:396437]
42. RPLP2 ENSGALG00000034811 339.34 2731.40 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
43. RPS15A ENSGALG00000006771 339.34 2731.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. PPIA ENSGALG00000028600 337.63 2717.64 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
45. RPS21 ENSGALG00000005338 330.77 2662.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
46. RPL23A ENSGALG00000003966 329.92 2655.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
47. RPL29 ENSGALG00000026978 329.92 2655.58 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. RPS29 ENSGALG00000012229 322.20 2593.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. ENSGALG00000002696 ENSGALG00000002696 317.06 2552.07
50. RPL5 ENSGALG00000005922 314.49 2531.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
51. CIRBP ENSGALG00000030918 309.35 2490.01 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
52. GNB2L1 ENSGALG00000000122 309.35 2490.01 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPL27 ENSGALG00000002837 303.35 2441.71 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. RPL13 ENSGALG00000006179 302.49 2434.79 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
55. RPS14 ENSGALG00000004588 302.49 2434.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. RPS16 ENSGALG00000026490 291.35 2345.12 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. MT-ND6 MT-ND6 287.93 2317.60
58. TCEB3 ENSGALG00000034625 286.21 2303.75 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. PHB2 ENSGALG00000014567 285.36 2296.91 prohibitin 2 [Source:NCBI gene;Acc:771124]
60. RPS2 ENSGALG00000005490 281.07 2262.38 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
61. RPL38 ENSGALG00000001465 280.21 2255.46 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. CRHOA CRHOA 279.36 2248.61
63. RPS7 ENSGALG00000016392 278.50 2241.69 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. MT-ND1 MT-ND1 273.36 2200.32
65. RPL18A 271.64 2186.47 ribosomal protein L18a
66. RPS15 ENSGALG00000015195 270.79 2179.63 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. RPL36AL ENSGALG00000004952 264.79 2131.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
68. MT-ND3 MT-ND3 263.93 2124.42
69. RPL14 ENSGALG00000043379 260.50 2096.81 ribosomal protein L14
70. RPL12 ENSGALG00000008806 258.79 2083.04 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. ANP32B ENSGALG00000037483 257.93 2076.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. STMN1 ENSGALG00000001475 247.65 1993.38 stathmin 1 [Source:NCBI gene;Acc:396057]
73. RPS20 ENSGALG00000014432 246.79 1986.45 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
74. ATP5G3 245.94 1979.61 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. UBB ENSGALG00000004509 245.94 1979.61 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. HMGB2 ENSGALG00000010745 245.08 1972.69 high mobility group box 2 [Source:NCBI gene;Acc:396482]
77. RPL23 ENSGALG00000001634 243.37 1958.93 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. ENSGALG00000028649 ENSGALG00000028649 235.65 1896.79
79. RPL35 ENSGALG00000035677 234.80 1889.94 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
80. EEF1D 227.94 1834.73 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. MBD3 ENSGALG00000001101 227.08 1827.80 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
82. CNN3 ENSGALG00000005597 226.23 1820.96 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
83. NME2 ENSGALG00000002932 223.66 1800.28 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
84. EEF1B2 ENSGALG00000008590 222.80 1793.35 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
85. RPS13 ENSGALG00000006096 222.80 1793.35 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
86. HMGN5 ENSGALG00000007131 219.37 1765.75 high mobility group nucleosome binding domain 5, transcript variant X1
87. H3-IX H3-IX 218.52 1758.90
88. RPL37 ENSGALG00000014833 217.66 1751.98 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
89. RPS25 ENSGALG00000007699 215.09 1731.29 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
90. HSPA8 ENSGALG00000006512 214.23 1724.37 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. SLC25A6_1 ENSGALG00000016691 214.23 1724.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
92. RPS3 ENSGALG00000017330 209.95 1689.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
93. RPL24 ENSGALG00000015339 209.09 1683.00 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
94. EIF4G2 ENSGALG00000005587 195.38 1572.65 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
95. SET ENSGALG00000004701 194.52 1565.72 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
96. PSMC6 ENSGALG00000012408 191.95 1545.04 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
97. EIF5A2 ENSGALG00000009309 191.09 1538.11 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
98. BLMH ENSGALG00000004259 190.24 1531.27 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
99. ENO1 ENSGALG00000002377 188.52 1517.43 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
100. RPS27A ENSGALG00000036790 184.24 1482.98 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA