Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s18.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6742.32 54271.31
2. MT-ATP6 MT-ATP6 1814.14 14602.65
3. EEF1A EEF1A 1354.73 10904.70
4. RPS3A ENSGALG00000010077 952.75 7669.02 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. RPS10 ENSGALG00000002813 853.56 6870.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. ENSGALG00000018384 ENSGALG00000018384 850.95 6849.60
7. MT-ND5 MT-ND5 837.90 6744.55
8. MT-CO1 MT-CO1 817.01 6576.40
9. RPLP1 ENSGALG00000030878 817.01 6576.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 811.79 6534.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. MT-CYB MT-CYB 801.35 6450.35
12. MT-ND4 MT-ND4 691.72 5567.90
13. RPS23 ENSGALG00000015617 639.52 5147.72 ribosomal protein S23
14. RPL8 ENSGALG00000016232 602.97 4853.52 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. gga-mir-3533 ENSGALG00000027736 589.92 4748.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. MDK ENSGALG00000008367 548.16 4412.33 midkine [Source:NCBI gene;Acc:423196]
17. RPS8 ENSGALG00000010124 545.55 4391.32 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. TMSB4X ENSGALG00000026383 545.55 4391.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL4 ENSGALG00000007711 527.27 4244.18 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. RPL15 ENSGALG00000011290 509.00 4097.12 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL7A ENSGALG00000003197 509.00 4097.12 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. GAPDH ENSGALG00000014442 490.73 3950.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RPLP0 ENSGALG00000023294 488.12 3929.05 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. RPS6 ENSGALG00000015082 438.52 3529.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. ENSGALG00000018386 ENSGALG00000018386 422.86 3403.75
26. RPS12 ENSGALG00000013990 417.64 3361.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. gga-mir-3527 gga-mir-3527 417.64 3361.73
28. SNRPD1 ENSGALG00000041334 407.20 3277.70 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
29. RPL19 ENSGALG00000001658 396.76 3193.66 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPSA 391.54 3151.64 ribosomal protein SA
31. RPL29 ENSGALG00000026978 381.10 3067.61 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. ENSGALG00000002696 ENSGALG00000002696 368.05 2962.56
33. MT-ND1 MT-ND1 368.05 2962.56
34. TXN ENSGALG00000015704 368.05 2962.56 thioredoxin [Source:NCBI gene;Acc:396437]
35. RPS4 RPS4 365.44 2941.56
36. RPL6 ENSGALG00000004818 360.22 2899.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
37. RPL13 ENSGALG00000006179 357.61 2878.53 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
38. RPL27A ENSGALG00000005948 357.61 2878.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RAN ENSGALG00000002569 355.00 2857.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPS28 ENSGALG00000024398 339.33 2731.39 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
41. ANP32B ENSGALG00000037483 326.28 2626.34 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
42. RPL23A ENSGALG00000003966 318.45 2563.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
43. RPL21 ENSGALG00000027035 315.84 2542.31 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPS14 ENSGALG00000004588 315.84 2542.31 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. RPL26 RPL26 313.23 2521.30
46. RPL27 ENSGALG00000002837 302.79 2437.26 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. PHB2 ENSGALG00000014567 297.57 2395.25 prohibitin 2 [Source:NCBI gene;Acc:771124]
48. RPS29 ENSGALG00000012229 292.35 2353.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. RPL36AL ENSGALG00000004952 289.74 2332.22 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
50. RPL5 ENSGALG00000005922 289.74 2332.22 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
51. NME2 ENSGALG00000002932 284.52 2290.20 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. HMGB2 ENSGALG00000010745 281.91 2269.19 high mobility group box 2 [Source:NCBI gene;Acc:396482]
53. CIRBP ENSGALG00000030918 279.30 2248.18 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
54. MT-ND3 MT-ND3 276.69 2227.18
55. RPS15A ENSGALG00000006771 274.08 2206.17 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. RPS15 ENSGALG00000015195 271.47 2185.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. RPS2 ENSGALG00000005490 271.47 2185.16 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
58. RPL12 ENSGALG00000008806 268.86 2164.15 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. RPL32 ENSGALG00000027142 268.86 2164.15 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
60. HMGN5 ENSGALG00000007131 263.64 2122.13 high mobility group nucleosome binding domain 5, transcript variant X1
61. RPL37 ENSGALG00000014833 261.03 2101.12 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPLP2 ENSGALG00000034811 261.03 2101.12 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
63. RPS7 ENSGALG00000016392 258.42 2080.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. AKAP12 ENSGALG00000036240 255.81 2059.10 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
65. RPS21 ENSGALG00000005338 253.20 2038.10 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
66. PPIA ENSGALG00000028600 250.59 2017.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
67. MT-ND6 MT-ND6 247.98 1996.08
68. CRHOA CRHOA 242.75 1953.98
69. RPL23 ENSGALG00000001634 242.75 1953.98 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. GPC4 ENSGALG00000006080 232.31 1869.95 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
71. RPL18A 229.70 1848.94 ribosomal protein L18a
72. RPL14 ENSGALG00000043379 227.09 1827.93 ribosomal protein L14
73. RPL38 ENSGALG00000001465 227.09 1827.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. RPS13 ENSGALG00000006096 227.09 1827.93 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. EEF1B2 ENSGALG00000008590 221.87 1785.91 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
76. UBB ENSGALG00000004509 219.26 1764.90 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. MBD3 ENSGALG00000001101 216.65 1743.89 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
78. GNB2L1 ENSGALG00000000122 211.43 1701.87 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
79. RPS11 ENSGALG00000017299 208.82 1680.87 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
80. HSPA8 ENSGALG00000006512 203.60 1638.85 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
81. RPL3 ENSGALG00000012172 203.60 1638.85 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
82. RPS16 ENSGALG00000026490 203.60 1638.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
83. SET ENSGALG00000004701 203.60 1638.85 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
84. EIF4G2 ENSGALG00000005587 200.99 1617.84 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
85. EIF5A2 ENSGALG00000009309 200.99 1617.84 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
86. HMGN2 HMGN2 200.99 1617.84
87. RPL35 ENSGALG00000035677 200.99 1617.84 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
88. STMN1 ENSGALG00000001475 200.99 1617.84 stathmin 1 [Source:NCBI gene;Acc:396057]
89. ENSGALG00000028992 ENSGALG00000028992 198.38 1596.83
90. HSP90AA1 ENSGALG00000033212 198.38 1596.83 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
91. BLMH ENSGALG00000004259 195.77 1575.82 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
92. RPL10A ENSGALG00000002644 193.16 1554.81 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. RPL7 ENSGALG00000035252 193.16 1554.81 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
94. RPS3 ENSGALG00000017330 190.55 1533.80 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
95. RPL24 ENSGALG00000015339 187.94 1512.80 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
96. TCEB3 ENSGALG00000034625 187.94 1512.80 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
97. NUCKS1 ENSGALG00000000708 185.33 1491.79 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
98. RPS25 ENSGALG00000007699 182.72 1470.78 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
99. HNRNPDL ENSGALG00000023199 180.11 1449.77 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. EIF2S1 ENSGALG00000009565 177.50 1428.76 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA