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Experiment Chicken_E3_embryo, section s87.

Sample reads: 113,517. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4310.33 37972.73
2. EEF1A EEF1A 1147.57 10109.75
3. CIRBP ENSGALG00000030918 1121.24 9877.79 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 997.89 8791.11 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. MT-ATP6 MT-ATP6 968.78 8534.66
6. GAPDH ENSGALG00000014442 936.91 8253.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. gga-mir-3533 ENSGALG00000027736 934.14 8229.50 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND5 MT-ND5 796.93 7020.72
9. RPS10 ENSGALG00000002813 773.36 6813.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP0 ENSGALG00000023294 753.96 6642.16 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPL15 ENSGALG00000011290 744.26 6556.71 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPLP1 ENSGALG00000030878 738.72 6507.90 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPL23A ENSGALG00000003966 686.05 6043.90 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
14. MDK ENSGALG00000008367 608.44 5360.18 midkine [Source:NCBI gene;Acc:423196]
15. RPL27A ENSGALG00000005948 604.28 5323.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPL4 ENSGALG00000007711 594.58 5238.07 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPS21 ENSGALG00000005338 558.54 4920.57 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
18. PPIA ENSGALG00000028600 540.52 4761.82 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPS23 ENSGALG00000015617 537.75 4737.42 ribosomal protein S23
20. SNRPD1 ENSGALG00000041334 532.21 4688.61 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. RPS29 ENSGALG00000012229 523.89 4615.32 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
22. RPSA 514.19 4529.86 ribosomal protein SA
23. RPL26 RPL26 496.17 4371.11
24. RPL19 ENSGALG00000001658 485.09 4273.50 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS12 ENSGALG00000013990 471.23 4151.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPS6 ENSGALG00000015082 465.68 4102.50 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
27. HMGN5 ENSGALG00000007131 443.51 3907.19 high mobility group nucleosome binding domain 5, transcript variant X1
28. RPL29 ENSGALG00000026978 437.96 3858.30 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
29. MT-ND4 MT-ND4 428.26 3772.84
30. RPL7A ENSGALG00000003197 422.72 3724.04 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL13 ENSGALG00000006179 417.17 3675.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
32. RPL27 ENSGALG00000002837 417.17 3675.14 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPL8 ENSGALG00000016232 417.17 3675.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
34. RPS8 ENSGALG00000010124 417.17 3675.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
35. RPS15A ENSGALG00000006771 415.79 3662.99 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. ANP32B ENSGALG00000037483 406.09 3577.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
37. RPS11 ENSGALG00000017299 404.70 3565.29 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. RPL12 ENSGALG00000008806 400.54 3528.64 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPL38 ENSGALG00000001465 393.61 3467.59 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
40. MT-CYB MT-CYB 382.52 3369.89
41. RPS2 ENSGALG00000005490 382.52 3369.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
42. RPS3A ENSGALG00000010077 381.14 3357.73 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
43. RPL35 ENSGALG00000035677 363.12 3198.98 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
44. RPS16 ENSGALG00000026490 358.96 3162.33 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPS27A ENSGALG00000036790 356.19 3137.93 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. ENSGALG00000028649 ENSGALG00000028649 354.81 3125.77
47. RPS4 RPS4 350.65 3089.12
48. gga-mir-3527 gga-mir-3527 349.26 3076.88
49. RPS15 ENSGALG00000015195 347.88 3064.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL32 ENSGALG00000027142 336.79 2967.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPL37 ENSGALG00000014833 336.79 2967.02 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. PHB2 ENSGALG00000014567 335.40 2954.77 prohibitin 2 [Source:NCBI gene;Acc:771124]
53. RPS20 ENSGALG00000014432 335.40 2954.77 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. MT-CO1 MT-CO1 331.24 2918.13
55. TXN ENSGALG00000015704 328.47 2893.72 thioredoxin [Source:NCBI gene;Acc:396437]
56. NME2 ENSGALG00000002932 325.70 2869.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPL36 ENSGALG00000000474 324.31 2857.07 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. RPL24 ENSGALG00000015339 318.77 2808.27 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
59. ALDOC ENSGALG00000026077 311.84 2747.22 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
60. RPL21 ENSGALG00000027035 307.68 2710.57 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. GNB2L1 ENSGALG00000000122 303.52 2673.92 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
62. RPL6 ENSGALG00000004818 302.14 2661.76 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS14 ENSGALG00000004588 302.14 2661.76 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPS7 ENSGALG00000016392 302.14 2661.76 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. EIF5A2 ENSGALG00000009309 300.75 2649.52 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
66. RPS28 ENSGALG00000024398 295.21 2600.71 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
67. TCEB3 ENSGALG00000034625 288.28 2539.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
68. RPL18A 278.58 2454.21 ribosomal protein L18a
69. ENO1 ENSGALG00000002377 271.65 2393.16 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPL23 ENSGALG00000001634 268.88 2368.75 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. SET ENSGALG00000004701 264.72 2332.10 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
72. RPL36AL ENSGALG00000004952 263.33 2319.86 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. STMN1 ENSGALG00000001475 261.95 2307.70 stathmin 1 [Source:NCBI gene;Acc:396057]
74. ENSGALG00000018384 ENSGALG00000018384 256.40 2258.81
75. RPL14 ENSGALG00000043379 245.31 2161.11 ribosomal protein L14
76. RPLP2 ENSGALG00000034811 241.16 2124.55 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
77. RPL7 ENSGALG00000035252 238.38 2100.06 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
78. ENSGALG00000002696 ENSGALG00000002696 237.00 2087.90
79. ATP5G3 234.23 2063.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
80. RPS25 ENSGALG00000007699 232.84 2051.25 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
81. TMSB4X ENSGALG00000026383 232.84 2051.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
82. MBD3 ENSGALG00000001101 225.91 1990.20 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
83. CRHOA CRHOA 224.53 1978.04
84. SLC25A6_1 ENSGALG00000016691 218.98 1929.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
85. HMGN2 HMGN2 214.82 1892.50
86. RPL31 ENSGALG00000016775 214.82 1892.50 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. RPL37A ENSGALG00000011472 214.82 1892.50 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
88. MT-ND1 MT-ND1 213.44 1880.34
89. RPL5 ENSGALG00000005922 213.44 1880.34 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
90. RPS13 ENSGALG00000006096 213.44 1880.34 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
91. PRDX1 ENSGALG00000010243 210.67 1855.94 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. RPS17 ENSGALG00000002157 210.67 1855.94 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
93. ENSGALG00000028992 ENSGALG00000028992 209.28 1843.69
94. HSPA8 ENSGALG00000006512 209.28 1843.69 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
95. RAN ENSGALG00000002569 206.51 1819.29 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
96. UBB ENSGALG00000004509 202.35 1782.64 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. EEF1D 200.96 1770.40 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. NDUFB9 ENSGALG00000042242 200.96 1770.40 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
99. H3-IX H3-IX 192.65 1697.19
100. RPL10A ENSGALG00000002644 192.65 1697.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA