Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s86.

Sample reads: 113,585. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4184.01 36836.54
2. EEF1A EEF1A 1133.97 9983.61
3. CIRBP ENSGALG00000030918 1088.21 9580.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. MT-ATP6 MT-ATP6 1007.86 8873.32
5. GAPDH ENSGALG00000014442 989.56 8712.21 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. gga-mir-3533 ENSGALG00000027736 960.06 8452.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 947.86 8345.08 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. MT-ND5 MT-ND5 924.47 8139.15
9. RPL15 ENSGALG00000011290 832.94 7333.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
10. RPS10 ENSGALG00000002813 804.46 7082.57 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. MDK ENSGALG00000008367 802.43 7064.69 midkine [Source:NCBI gene;Acc:423196]
12. RPLP1 ENSGALG00000030878 796.32 7010.90 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPLP0 ENSGALG00000023294 790.22 6957.19 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
14. RPL23A ENSGALG00000003966 780.05 6867.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPL4 ENSGALG00000007711 636.65 5605.15 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS23 ENSGALG00000015617 601.06 5291.81 ribosomal protein S23
17. RPL27A ENSGALG00000005948 563.43 4960.51 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. SNRPD1 ENSGALG00000041334 559.36 4924.67 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPSA 534.95 4709.77 ribosomal protein SA
20. MT-ND4 MT-ND4 526.82 4638.19
21. RPS6 ENSGALG00000015082 522.75 4602.36 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. RPL13 ENSGALG00000006179 513.59 4521.71 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. PPIA ENSGALG00000028600 504.44 4441.15 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPL8 ENSGALG00000016232 486.13 4279.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPS21 ENSGALG00000005338 478.00 4208.37 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
26. RPS8 ENSGALG00000010124 464.78 4091.98 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. MT-CYB MT-CYB 458.67 4038.19
28. RPL26 RPL26 457.66 4029.30
29. RPL35 ENSGALG00000035677 457.66 4029.30 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. RPL7A ENSGALG00000003197 455.62 4011.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS2 ENSGALG00000005490 446.47 3930.78 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. ANP32B ENSGALG00000037483 444.44 3912.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
33. RPS29 ENSGALG00000012229 441.39 3886.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPL19 ENSGALG00000001658 434.27 3823.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPS15A ENSGALG00000006771 433.25 3814.39 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS3A ENSGALG00000010077 425.11 3742.72 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
37. RPS15 ENSGALG00000015195 424.10 3733.83 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
38. RPL29 ENSGALG00000026978 423.08 3724.85 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL38 ENSGALG00000001465 423.08 3724.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
40. RPL27 ENSGALG00000002837 414.94 3653.18 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. GNB2L1 ENSGALG00000000122 406.81 3581.61 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPS11 ENSGALG00000017299 406.81 3581.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. HMGN5 ENSGALG00000007131 394.60 3474.11 high mobility group nucleosome binding domain 5, transcript variant X1
44. RPL37 ENSGALG00000014833 392.57 3456.23 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
45. RPS12 ENSGALG00000013990 390.53 3438.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. PHB2 ENSGALG00000014567 374.26 3295.03 prohibitin 2 [Source:NCBI gene;Acc:771124]
47. gga-mir-3527 gga-mir-3527 373.25 3286.14
48. RPS16 ENSGALG00000026490 361.04 3178.64 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPL12 ENSGALG00000008806 356.97 3142.81 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
50. RPL36 ENSGALG00000000474 356.97 3142.81 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
51. RPL32 ENSGALG00000027142 349.85 3080.12 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS4 RPS4 345.79 3044.38
53. MT-CO1 MT-CO1 339.68 2990.58
54. TXN ENSGALG00000015704 338.67 2981.69 thioredoxin [Source:NCBI gene;Acc:396437]
55. RPS27A ENSGALG00000036790 337.65 2972.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. NME2 ENSGALG00000002932 327.48 2883.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPS28 ENSGALG00000024398 319.34 2811.51 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
58. STMN1 ENSGALG00000001475 312.22 2748.82 stathmin 1 [Source:NCBI gene;Acc:396057]
59. EIF5A2 ENSGALG00000009309 306.12 2695.12 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
60. RPL14 ENSGALG00000043379 304.09 2677.25 ribosomal protein L14
61. RPL24 ENSGALG00000015339 302.05 2659.29 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. RPL21 ENSGALG00000027035 295.95 2605.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. ENO1 ENSGALG00000002377 286.80 2525.02 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
64. ENSGALG00000028649 ENSGALG00000028649 286.80 2525.02
65. RPS14 ENSGALG00000004588 285.78 2516.04 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RPL23 ENSGALG00000001634 281.71 2480.21 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPS7 ENSGALG00000016392 281.71 2480.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
68. RPL37A ENSGALG00000011472 272.56 2399.65 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
69. RPL6 ENSGALG00000004818 268.49 2363.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. RPL18A 266.46 2345.95 ribosomal protein L18a
71. SET ENSGALG00000004701 266.46 2345.95 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
72. ALDOC ENSGALG00000026077 257.31 2265.39 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. RPS20 ENSGALG00000014432 244.08 2148.91 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
74. HMGN2 HMGN2 239.00 2104.19
75. PRDX1 ENSGALG00000010243 237.98 2095.21 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
76. RPL36AL ENSGALG00000004952 235.95 2077.33 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
77. TCEB3 ENSGALG00000034625 233.91 2059.37 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
78. ATP5G3 232.90 2050.48 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. RPL5 ENSGALG00000005922 232.90 2050.48 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. MT-ND3 MT-ND3 230.86 2032.52
81. RPL7 ENSGALG00000035252 226.79 1996.69 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. CRHOA CRHOA 225.78 1987.80
83. HSPA8 ENSGALG00000006512 221.71 1951.96 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. MT-ND1 MT-ND1 218.66 1925.11
85. LDHB ENSGALG00000035836 217.64 1916.13 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. RPS25 ENSGALG00000007699 217.64 1916.13 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
87. ENSGALG00000028992 ENSGALG00000028992 213.57 1880.30
88. RPS13 ENSGALG00000006096 210.52 1853.44 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
89. HNRNPDL ENSGALG00000023199 207.47 1826.59 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
90. SLC25A6_1 ENSGALG00000016691 207.47 1826.59 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. TMSB4X ENSGALG00000026383 207.47 1826.59 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
92. RPLP2 ENSGALG00000034811 206.45 1817.61 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
93. UBB ENSGALG00000004509 199.34 1755.01 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
94. EIF4G2 ENSGALG00000005587 195.27 1719.18 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
95. MBD3 ENSGALG00000001101 194.25 1710.20 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
96. RPS17 ENSGALG00000002157 191.20 1683.35 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
97. EEF1D 190.18 1674.37 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. RAN ENSGALG00000002569 187.13 1647.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. ENSGALG00000018384 ENSGALG00000018384 185.10 1629.64
100. MEIS2 ENSGALG00000039118 185.10 1629.64 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA