Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s85.

Sample reads: 113,567. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3981.74 35062.36
2. EEF1A EEF1A 1262.06 11113.43
3. MT-ATP6 MT-ATP6 1070.13 9423.34
4. CIRBP ENSGALG00000030918 980.50 8634.08 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. MT-ND5 MT-ND5 920.74 8107.84
6. gga-mir-3533 ENSGALG00000027736 899.92 7924.51 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MDK ENSGALG00000008367 899.02 7916.58 midkine [Source:NCBI gene;Acc:423196]
8. GAPDH ENSGALG00000014442 878.19 7733.16 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPLP0 ENSGALG00000023294 784.94 6912.02 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPL15 ENSGALG00000011290 773.17 6808.37 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 761.40 6704.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. RPL4 ENSGALG00000007711 743.29 6545.26 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS10 ENSGALG00000002813 730.62 6433.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPL23A ENSGALG00000003966 709.80 6250.35 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPLP1 ENSGALG00000030878 655.48 5772.02 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. PPIA ENSGALG00000028600 605.68 5333.49 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPS11 ENSGALG00000017299 567.66 4998.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
18. RPS23 ENSGALG00000015617 565.85 4982.76 ribosomal protein S23
19. RPL27A ENSGALG00000005948 504.28 4440.58 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. SNRPD1 ENSGALG00000041334 503.38 4432.66 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. MT-ND4 MT-ND4 494.32 4352.88
22. RPL13 ENSGALG00000006179 488.89 4305.06 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. RPS21 ENSGALG00000005338 488.89 4305.06 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. RPL19 ENSGALG00000001658 474.40 4177.47 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS6 ENSGALG00000015082 462.64 4073.91 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
26. GNB2L1 ENSGALG00000000122 459.92 4049.96 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
27. RPL26 RPL26 456.30 4018.08
28. RPSA 452.68 3986.20 ribosomal protein SA
29. RPS15A ENSGALG00000006771 450.87 3970.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. RPL35 ENSGALG00000035677 444.53 3914.44 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
31. RPS29 ENSGALG00000012229 444.53 3914.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
32. RPL38 ENSGALG00000001465 443.62 3906.42 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
33. MT-CYB MT-CYB 440.00 3874.55
34. HMGN5 ENSGALG00000007131 423.71 3731.10 high mobility group nucleosome binding domain 5, transcript variant X1
35. RPL7A ENSGALG00000003197 423.71 3731.10 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS8 ENSGALG00000010124 423.71 3731.10 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
37. RPL8 ENSGALG00000016232 415.56 3659.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
38. RPL29 ENSGALG00000026978 414.65 3651.32 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPS2 ENSGALG00000005490 399.26 3515.80 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
40. RPL32 ENSGALG00000027142 392.92 3459.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
41. PHB2 ENSGALG00000014567 386.59 3404.23 prohibitin 2 [Source:NCBI gene;Acc:771124]
42. RPS12 ENSGALG00000013990 385.68 3396.22 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPS4 RPS4 380.25 3348.40
44. RPL21 ENSGALG00000027035 377.53 3324.45 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. gga-mir-3527 gga-mir-3527 374.82 3300.59
46. RPS27A ENSGALG00000036790 371.19 3268.62 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. MT-CO1 MT-CO1 355.80 3133.10
48. NME2 ENSGALG00000002932 355.80 3133.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPS15 ENSGALG00000015195 355.80 3133.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL27 ENSGALG00000002837 353.99 3117.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPL37 ENSGALG00000014833 345.84 3045.39 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. RPS3A ENSGALG00000010077 342.22 3013.52 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
53. ENSGALG00000028649 ENSGALG00000028649 337.70 2973.72
54. RPL6 ENSGALG00000004818 329.55 2901.95 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPL12 ENSGALG00000008806 325.93 2870.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
56. TXN ENSGALG00000015704 325.93 2870.07 thioredoxin [Source:NCBI gene;Acc:396437]
57. RPS28 ENSGALG00000024398 321.40 2830.18 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
58. RPL36 ENSGALG00000000474 313.25 2758.41 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
59. RPS16 ENSGALG00000026490 309.63 2726.54 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. RPL37A ENSGALG00000011472 299.67 2638.83 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
61. ANP32B ENSGALG00000037483 296.96 2614.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPL23 ENSGALG00000001634 296.05 2606.95 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
63. RPL14 ENSGALG00000043379 292.43 2575.08 ribosomal protein L14
64. SET ENSGALG00000004701 277.04 2439.56 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
65. RPL24 ENSGALG00000015339 272.51 2399.67 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
66. STMN1 ENSGALG00000001475 271.61 2391.74 stathmin 1 [Source:NCBI gene;Acc:396057]
67. RPS14 ENSGALG00000004588 268.89 2367.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. ENO1 ENSGALG00000002377 267.98 2359.78 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
69. EEF1D 264.36 2327.90 eukaryotic translation elongation factor 1 delta, transcript variant X13
70. EIF5A2 ENSGALG00000009309 264.36 2327.90 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
71. RPS7 ENSGALG00000016392 262.55 2311.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. ALDOC ENSGALG00000026077 258.93 2280.08 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. RPL36AL ENSGALG00000004952 250.78 2208.32 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
74. RPS20 ENSGALG00000014432 249.88 2200.39 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
75. TCEB3 ENSGALG00000034625 249.88 2200.39 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
76. HMGN2 HMGN2 248.07 2184.45
77. RPL18A 242.63 2136.55 ribosomal protein L18a
78. RPL5 ENSGALG00000005922 239.92 2112.69 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
79. CRHOA CRHOA 234.49 2064.87
80. ATP5G3 232.68 2048.93 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. ENSGALG00000002696 ENSGALG00000002696 221.81 1953.21
82. RPLP2 ENSGALG00000034811 221.81 1953.21 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
83. RPS25 ENSGALG00000007699 221.81 1953.21 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
84. ENSGALG00000018384 ENSGALG00000018384 220.91 1945.29
85. RPS13 ENSGALG00000006096 219.10 1929.35 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
86. HNRNPDL ENSGALG00000023199 215.47 1897.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. RPL7 ENSGALG00000035252 215.47 1897.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. FKBP4 ENSGALG00000014331 212.76 1873.52 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
89. RPL31 ENSGALG00000016775 204.61 1801.75 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
90. MT-ND1 MT-ND1 200.99 1769.88
91. HSPA8 ENSGALG00000006512 200.08 1761.86 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. ENSGALG00000028992 ENSGALG00000028992 198.27 1745.92
93. MT-ND3 MT-ND3 194.65 1714.05
94. MBD3 ENSGALG00000001101 193.75 1706.12 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
95. H3-IX H3-IX 192.84 1698.11
96. RAN ENSGALG00000002569 191.03 1682.17 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. TMSB4X ENSGALG00000026383 189.22 1666.23 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
98. UBB ENSGALG00000004509 189.22 1666.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. RPS17 ENSGALG00000002157 187.41 1650.29 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
100. LDHB ENSGALG00000035836 186.50 1642.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA