Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s22.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6672.84 53710.44
2. EEF1A EEF1A 1778.49 14315.27
3. MT-ATP6 MT-ATP6 1579.88 12716.63
4. ENSGALG00000018384 ENSGALG00000018384 965.10 7768.20
5. GAL10 GAL10 943.14 7591.44
6. RPS3A ENSGALG00000010077 919.19 7398.66 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. RPS23 ENSGALG00000015617 819.38 6595.28 ribosomal protein S23
8. MT-CYB MT-CYB 772.48 6217.78
9. RPS10 ENSGALG00000002813 747.53 6016.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP1 ENSGALG00000030878 728.56 5864.26 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. MT-CO1 MT-CO1 717.58 5775.88
12. TMSB4X ENSGALG00000026383 710.60 5719.70 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 670.68 5398.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPS8 ENSGALG00000010124 657.70 5293.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPL8 ENSGALG00000016232 632.75 5093.08 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. MT-ND5 MT-ND5 624.77 5028.84
17. gga-mir-3533 ENSGALG00000027736 601.81 4844.04 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. MT-ND4 MT-ND4 583.85 4699.47
19. GAPDH ENSGALG00000014442 523.97 4217.49 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
20. RPS12 ENSGALG00000013990 503.01 4048.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL7A ENSGALG00000003197 498.02 4008.62 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RAN ENSGALG00000002569 495.02 3984.47 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
23. RPS6 ENSGALG00000015082 462.09 3719.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. RPL4 ENSGALG00000007711 456.10 3671.20 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
25. TXN ENSGALG00000015704 441.13 3550.70 thioredoxin [Source:NCBI gene;Acc:396437]
26. RPL23A ENSGALG00000003966 431.15 3470.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
27. RPL26 RPL26 409.19 3293.62
28. RPL15 ENSGALG00000011290 406.20 3269.55 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPL19 ENSGALG00000001658 406.20 3269.55 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPLP0 ENSGALG00000023294 400.21 3221.34 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
31. RPL36AL ENSGALG00000004952 393.22 3165.07 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
32. RPL27 ENSGALG00000002837 392.23 3157.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. gga-mir-3527 gga-mir-3527 391.23 3149.05
34. ENSGALG00000002696 ENSGALG00000002696 388.23 3124.91
35. RPS21 ENSGALG00000005338 387.24 3116.94 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPSA 386.24 3108.89 ribosomal protein SA
37. RPS4 RPS4 385.24 3100.84
38. RPL13 ENSGALG00000006179 381.25 3068.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
39. RPL5 ENSGALG00000005922 373.26 3004.41 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
40. RPL6 ENSGALG00000004818 371.27 2988.39 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
41. RPL27A ENSGALG00000005948 354.30 2851.80 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. RPL29 ENSGALG00000026978 346.32 2787.57 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
43. RPL21 ENSGALG00000027035 345.32 2779.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPLP2 ENSGALG00000034811 339.33 2731.31 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
45. RPS28 ENSGALG00000024398 337.33 2715.21 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
46. CIRBP ENSGALG00000030918 330.35 2659.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
47. RPL18A 330.35 2659.02 ribosomal protein L18a
48. RPS14 ENSGALG00000004588 327.35 2634.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
49. PHB2 ENSGALG00000014567 322.36 2594.71 prohibitin 2 [Source:NCBI gene;Acc:771124]
50. RPL37 ENSGALG00000014833 309.39 2490.31 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. RPL23 ENSGALG00000001634 307.39 2474.22 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
52. RPS15 ENSGALG00000015195 301.41 2426.08 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. RPS29 ENSGALG00000012229 300.41 2418.03 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. RPL32 ENSGALG00000027142 290.43 2337.70 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. ENSGALG00000018386 ENSGALG00000018386 287.43 2313.56
56. SNRPD1 ENSGALG00000041334 287.43 2313.56 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
57. RPS15A ENSGALG00000006771 281.44 2265.34 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
58. HMGN5 ENSGALG00000007131 277.45 2233.23 high mobility group nucleosome binding domain 5, transcript variant X1
59. RPL14 ENSGALG00000043379 270.47 2177.04 ribosomal protein L14
60. CRHOA CRHOA 268.47 2160.95
61. RPS7 ENSGALG00000016392 268.47 2160.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL38 ENSGALG00000001465 266.47 2144.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
63. TCEB3 ENSGALG00000034625 266.47 2144.85 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPS11 ENSGALG00000017299 263.48 2120.78 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. HSPA8 ENSGALG00000006512 262.48 2112.73 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
66. RPL35 ENSGALG00000035677 261.48 2104.68 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
67. RPS16 ENSGALG00000026490 254.50 2048.50 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
68. MDK ENSGALG00000008367 251.50 2024.35 midkine [Source:NCBI gene;Acc:423196]
69. RPL12 ENSGALG00000008806 250.51 2016.38 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
70. ANP32B ENSGALG00000037483 247.51 1992.24 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. STMN1 ENSGALG00000001475 247.51 1992.24 stathmin 1 [Source:NCBI gene;Acc:396057]
72. MT-ND3 MT-ND3 246.51 1984.19
73. PSMC6 ENSGALG00000012408 246.51 1984.19 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
74. RPS25 ENSGALG00000007699 245.52 1976.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. RPS3 ENSGALG00000017330 244.52 1968.17 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. H3-IX H3-IX 242.52 1952.07
77. PPIA ENSGALG00000028600 241.52 1944.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
78. RPL7 ENSGALG00000035252 238.53 1919.95 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
79. HMGN2 HMGN2 232.54 1871.74
80. MT-ND1 MT-ND1 229.55 1847.67
81. SET ENSGALG00000004701 221.56 1783.36 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
82. ATP5G3 220.56 1775.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. HMGB2 ENSGALG00000010745 219.57 1767.34 high mobility group box 2 [Source:NCBI gene;Acc:396482]
84. NME2 ENSGALG00000002932 219.57 1767.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
85. UBB ENSGALG00000004509 219.57 1767.34 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. CNN3 ENSGALG00000005597 218.57 1759.29 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
87. RPS24 ENSGALG00000004871 214.58 1727.18 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
88. RPS2 ENSGALG00000005490 213.58 1719.13 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
89. ENSGALG00000028992 ENSGALG00000028992 209.59 1687.01
90. EEF1B2 ENSGALG00000008590 207.59 1670.92 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
91. HSP90B1 ENSGALG00000033789 207.59 1670.92 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
92. MBD3 ENSGALG00000001101 207.59 1670.92 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
93. RPS13 ENSGALG00000006096 205.59 1654.82 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
94. RPS20 ENSGALG00000014432 205.59 1654.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
95. BLMH ENSGALG00000004259 204.60 1646.85 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
96. ENO1 ENSGALG00000002377 204.60 1646.85 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
97. RPL10A ENSGALG00000002644 204.60 1646.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
98. DYL1 ENSGALG00000007153 203.60 1638.80 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. ENSGALG00000028649 ENSGALG00000028649 201.60 1622.70
100. EIF4G2 ENSGALG00000005587 200.60 1614.65 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA