Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s8.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6726.71 54142.88
2. EEF1A EEF1A 1557.54 12536.54
3. MT-ATP6 MT-ATP6 1308.08 10528.66
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 994.68 8006.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS3A ENSGALG00000010077 915.74 7370.74 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPS10 ENSGALG00000002813 826.53 6652.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. TMSB4X ENSGALG00000026383 816.27 6570.11 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
8. RPS23 ENSGALG00000015617 682.85 5496.22 ribosomal protein S23
9. RPLP1 ENSGALG00000030878 682.07 5489.94 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. gga-mir-3533 ENSGALG00000027736 649.70 5229.40 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-CO1 MT-CO1 647.33 5210.32
12. RPS8 ENSGALG00000010124 633.91 5102.30 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPL8 ENSGALG00000016232 617.33 4968.85 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
14. MT-ND5 MT-ND5 611.02 4918.06
15. RPS12 ENSGALG00000013990 556.55 4479.64 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
16. RPL4 ENSGALG00000007711 546.28 4396.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPL7A ENSGALG00000003197 543.92 4377.98 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. ENSGALG00000018384 ENSGALG00000018384 539.97 4346.19
19. RPLP0 ENSGALG00000023294 538.39 4333.47 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
20. MT-CYB MT-CYB 521.81 4200.02
21. MT-ND4 MT-ND4 521.81 4200.02
22. GAPDH ENSGALG00000014442 517.86 4168.22 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. HMGB2 ENSGALG00000010745 492.60 3964.91 high mobility group box 2 [Source:NCBI gene;Acc:396482]
24. RPL27 ENSGALG00000002837 466.55 3755.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPL27A ENSGALG00000005948 443.66 3570.99 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. TXN ENSGALG00000015704 424.71 3418.46 thioredoxin [Source:NCBI gene;Acc:396437]
27. RPS4 RPS4 423.92 3412.11
28. RAN ENSGALG00000002569 405.77 3266.02 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
29. RPL15 ENSGALG00000011290 402.61 3240.58 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
30. RPL23A ENSGALG00000003966 401.03 3227.87 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPSA 401.03 3227.87 ribosomal protein SA
32. RPL19 ENSGALG00000001658 398.66 3208.79 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL26 RPL26 396.29 3189.71
34. RPS6 ENSGALG00000015082 383.66 3088.06 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. RPL32 ENSGALG00000027142 381.29 3068.98 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. RPL29 ENSGALG00000026978 380.50 3062.62 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
37. RPS28 ENSGALG00000024398 373.40 3005.47 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
38. ENSGALG00000002696 ENSGALG00000002696 368.66 2967.32
39. PHB2 ENSGALG00000014567 357.61 2878.38 prohibitin 2 [Source:NCBI gene;Acc:771124]
40. RPL5 ENSGALG00000005922 348.93 2808.52 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
41. RPS14 ENSGALG00000004588 339.45 2732.21 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
42. ENSGALG00000028649 ENSGALG00000028649 337.88 2719.58
43. HMGN5 ENSGALG00000007131 337.09 2713.22 high mobility group nucleosome binding domain 5, transcript variant X1
44. RPS21 ENSGALG00000005338 325.24 2617.84 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
45. ENO1 ENSGALG00000002377 318.93 2567.05 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
46. RPL35 ENSGALG00000035677 317.35 2554.33 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. CIRBP ENSGALG00000030918 315.77 2541.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
48. RPS16 ENSGALG00000026490 314.19 2528.90 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPL38 ENSGALG00000001465 311.03 2503.46 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
50. HSPA8 ENSGALG00000006512 309.46 2490.82 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
51. RPL13 ENSGALG00000006179 307.09 2471.75 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
52. RPS7 ENSGALG00000016392 307.09 2471.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. HMGN2 HMGN2 306.30 2465.39
54. RPS15A ENSGALG00000006771 306.30 2465.39 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. RPL36AL ENSGALG00000004952 302.35 2433.60 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. RPS15 ENSGALG00000015195 300.77 2420.88 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. RPL14 ENSGALG00000043379 299.98 2414.52 ribosomal protein L14
58. SNRPD1 ENSGALG00000041334 299.98 2414.52 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
59. STMN1 ENSGALG00000001475 295.25 2376.45 stathmin 1 [Source:NCBI gene;Acc:396057]
60. RPL21 ENSGALG00000027035 290.51 2338.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. RPL18A 287.35 2312.86 ribosomal protein L18a
62. gga-mir-3527 gga-mir-3527 283.40 2281.07
63. PPIA ENSGALG00000028600 278.67 2243.00 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
64. RPL37 ENSGALG00000014833 277.88 2236.64 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. RPL23 ENSGALG00000001634 274.72 2211.20 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPS29 ENSGALG00000012229 273.93 2204.85 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. RPS2 ENSGALG00000005490 272.35 2192.13 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
68. RPL6 ENSGALG00000004818 270.77 2179.41 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPLP2 ENSGALG00000034811 270.77 2179.41 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
70. UBB ENSGALG00000004509 259.72 2090.47 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
71. NME2 ENSGALG00000002932 255.77 2058.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
72. PSMC6 ENSGALG00000012408 253.41 2039.68 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
73. BLMH ENSGALG00000004259 251.04 2020.61 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
74. ENSGALG00000018386 ENSGALG00000018386 243.14 1957.02
75. RPL12 ENSGALG00000008806 243.14 1957.02 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
76. MARCKSL1 ENSGALG00000032335 242.35 1950.66 MARCKS like 1 [Source:NCBI gene;Acc:770764]
77. CRHOA CRHOA 237.62 1912.59
78. TCEB3 ENSGALG00000034625 236.83 1906.23 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
79. RPS13 ENSGALG00000006096 236.04 1899.87 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. RPS25 ENSGALG00000007699 232.88 1874.44 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
81. ANP32B ENSGALG00000037483 229.72 1849.00 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
82. RPS3 ENSGALG00000017330 226.57 1823.65 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. MDK ENSGALG00000008367 223.41 1798.21 midkine [Source:NCBI gene;Acc:423196]
84. LDHB ENSGALG00000035836 218.67 1760.06 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
85. RPS11 ENSGALG00000017299 217.09 1747.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
86. SLC25A6_1 ENSGALG00000016691 214.72 1728.27 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
87. SET ENSGALG00000004701 213.93 1721.91 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
88. MT-ND3 MT-ND3 209.20 1683.84
89. PNRC1 ENSGALG00000015780 206.04 1658.40 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
90. RPL24 ENSGALG00000015339 206.04 1658.40 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
91. RPS27A ENSGALG00000036790 206.04 1658.40 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
92. H2AFZ ENSGALG00000014023 203.67 1639.33 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
93. AKAP12 ENSGALG00000036240 201.30 1620.25 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
94. ATP5G3 200.51 1613.89 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. EIF4G2 ENSGALG00000005587 200.51 1613.89 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. RPL10A ENSGALG00000002644 200.51 1613.89 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. RPS20 ENSGALG00000014432 198.94 1601.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
98. H3-IX H3-IX 198.15 1594.90
99. HBZ ENSGALG00000023740 198.15 1594.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
100. RPL7 ENSGALG00000035252 197.36 1588.54 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA