Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s7.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4545.41 36586.72
2. MT-ATP6 MT-ATP6 1572.85 12660.12
3. EEF1A EEF1A 1414.88 11388.59
4. ENSGALG00000018384 ENSGALG00000018384 891.82 7178.40
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 889.21 7157.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS3A ENSGALG00000010077 871.94 7018.38 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-CYB MT-CYB 848.93 6833.17
8. TMSB4X ENSGALG00000026383 834.81 6719.52 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
9. MT-ND5 MT-ND5 756.35 6087.98
10. RPLP1 ENSGALG00000030878 754.78 6075.34 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. RPS10 ENSGALG00000002813 747.98 6020.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. MT-CO1 MT-CO1 716.07 5763.76
13. gga-mir-3533 ENSGALG00000027736 667.95 5376.43 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPS23 ENSGALG00000015617 601.00 4837.54 ribosomal protein S23
15. GAPDH ENSGALG00000014442 584.78 4706.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPL4 ENSGALG00000007711 574.32 4622.79 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPLP0 ENSGALG00000023294 569.09 4580.70 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
18. RPS8 ENSGALG00000010124 541.37 4357.57 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPL8 ENSGALG00000016232 522.54 4206.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. MT-ND4 MT-ND4 486.97 3919.70
21. RPS4 RPS4 446.17 3591.29
22. RPL7A ENSGALG00000003197 441.46 3553.38 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL15 ENSGALG00000011290 431.53 3473.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPL23A ENSGALG00000003966 424.20 3414.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
25. RAN ENSGALG00000002569 412.17 3317.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. RPS6 ENSGALG00000015082 401.71 3233.43 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
27. RPL27A ENSGALG00000005948 398.05 3203.97 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. TXN ENSGALG00000015704 388.64 3128.22 thioredoxin [Source:NCBI gene;Acc:396437]
29. HMGB2 ENSGALG00000010745 387.07 3115.59 high mobility group box 2 [Source:NCBI gene;Acc:396482]
30. RPL27 ENSGALG00000002837 385.50 3102.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPL5 ENSGALG00000005922 375.04 3018.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
32. PHB2 ENSGALG00000014567 356.73 2871.38 prohibitin 2 [Source:NCBI gene;Acc:771124]
33. RPS12 ENSGALG00000013990 356.73 2871.38 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
34. CIRBP ENSGALG00000030918 350.97 2825.01 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. RPS28 ENSGALG00000024398 350.45 2820.83 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
36. gga-mir-3527 gga-mir-3527 341.04 2745.08
37. ENSGALG00000018386 ENSGALG00000018386 337.38 2715.62
38. RPL29 ENSGALG00000026978 334.24 2690.35 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL18A 332.67 2677.71 ribosomal protein L18a
40. RPS21 ENSGALG00000005338 332.67 2677.71 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL19 ENSGALG00000001658 332.14 2673.45 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. RPLP2 ENSGALG00000034811 330.58 2660.89 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
43. RPL6 ENSGALG00000004818 329.53 2652.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPSA 328.48 2643.99 ribosomal protein SA
45. RPL36AL ENSGALG00000004952 325.87 2622.98 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
46. ENSGALG00000002696 ENSGALG00000002696 323.25 2601.89
47. RPL26 RPL26 319.07 2568.24
48. HMGN5 ENSGALG00000007131 314.88 2534.52 high mobility group nucleosome binding domain 5, transcript variant X1
49. HMGN2 HMGN2 312.79 2517.70
50. RPL37 ENSGALG00000014833 312.27 2513.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
51. RPL32 ENSGALG00000027142 310.70 2500.87 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
52. RPS15 ENSGALG00000015195 310.70 2500.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. RPS29 ENSGALG00000012229 308.61 2484.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. CRABP-I ENSGALG00000003193 300.24 2416.68 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
55. RPS11 ENSGALG00000017299 297.62 2395.59 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. ANP32B ENSGALG00000037483 292.39 2353.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. ENSGALG00000028649 ENSGALG00000028649 287.16 2311.40
58. RPL21 ENSGALG00000027035 286.64 2307.21 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. ENO1 ENSGALG00000002377 284.55 2290.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. STMN1 ENSGALG00000001475 284.55 2290.39 stathmin 1 [Source:NCBI gene;Acc:396057]
61. RPS7 ENSGALG00000016392 282.98 2277.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL23 ENSGALG00000001634 280.36 2256.66 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
63. RPL14 ENSGALG00000043379 278.27 2239.84 ribosomal protein L14
64. MDK ENSGALG00000008367 277.75 2235.65 midkine [Source:NCBI gene;Acc:423196]
65. HSPA8 ENSGALG00000006512 276.70 2227.20 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
66. MARCKSL1 ENSGALG00000032335 273.04 2197.74 MARCKS like 1 [Source:NCBI gene;Acc:770764]
67. MT-ND1 MT-ND1 273.04 2197.74
68. SNRPD1 ENSGALG00000041334 273.04 2197.74 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
69. PPIA ENSGALG00000028600 269.90 2172.47 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
70. RPS2 ENSGALG00000005490 268.33 2159.83 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
71. RPS14 ENSGALG00000004588 265.72 2138.82 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. TCEB3 ENSGALG00000034625 262.05 2109.28 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. RPL12 ENSGALG00000008806 261.53 2105.10 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. MT-ND6 MT-ND6 259.44 2088.27
75. CRHOA CRHOA 249.50 2008.26
76. RPL38 ENSGALG00000001465 245.84 1978.80 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
77. RPL13 ENSGALG00000006179 244.27 1966.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
78. RPS25 ENSGALG00000007699 244.27 1966.17 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. AKAP12 ENSGALG00000036240 243.22 1957.72 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
80. MT-ND3 MT-ND3 238.52 1919.89
81. RPL35 ENSGALG00000035677 237.47 1911.43 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
82. ATP5G3 236.95 1907.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. GNB2L1 ENSGALG00000000122 235.90 1898.80 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
84. UBB ENSGALG00000004509 235.90 1898.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. RPS15A ENSGALG00000006771 234.33 1886.16 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
86. PSMC6 ENSGALG00000012408 232.76 1873.52 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
87. RPS16 ENSGALG00000026490 232.24 1869.34 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
88. BLMH ENSGALG00000004259 229.62 1848.25 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
89. SET ENSGALG00000004701 223.35 1797.78 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
90. RPS13 ENSGALG00000006096 218.64 1759.87 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
91. H3-IX H3-IX 217.59 1751.42
92. EIF4G2 ENSGALG00000005587 212.36 1709.32 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
93. SSR1 ENSGALG00000012798 205.04 1650.40 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
94. LDHB ENSGALG00000035836 198.76 1599.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. ENSGALG00000027002 ENSGALG00000027002 196.67 1583.03
96. RPS20 ENSGALG00000014432 196.67 1583.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
97. RPS3 ENSGALG00000017330 194.06 1562.02 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
98. ITGB1BP3 ENSGALG00000030120 191.96 1545.12 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
99. NME2 ENSGALG00000002932 191.96 1545.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
100. RPL7 ENSGALG00000035252 189.87 1528.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA