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Experiment Chicken_E4_posterior_slice_1, section s6.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5986.63 48187.45
2. MT-ATP6 MT-ATP6 1626.08 13088.61
3. EEF1A EEF1A 1441.08 11599.51
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 959.17 7720.53 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS3A ENSGALG00000010077 854.23 6875.85 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. TMSB4X ENSGALG00000026383 848.02 6825.86 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
7. MT-ND5 MT-ND5 782.72 6300.25
8. RPS10 ENSGALG00000002813 779.61 6275.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPLP0 ENSGALG00000023294 706.55 5687.15 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. MT-CO1 MT-CO1 687.90 5537.03
11. ENSGALG00000018384 ENSGALG00000018384 683.23 5499.44
12. RPLP1 ENSGALG00000030878 640.48 5155.34 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPS23 ENSGALG00000015617 632.71 5092.80 ribosomal protein S23
14. GAPDH ENSGALG00000014442 629.60 5067.76 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-CYB MT-CYB 606.28 4880.06
16. RPL4 ENSGALG00000007711 604.73 4867.58 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. MT-ND4 MT-ND4 602.39 4848.74
18. gga-mir-3533 ENSGALG00000027736 593.07 4773.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
19. RPS8 ENSGALG00000010124 518.45 4173.10 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPL8 ENSGALG00000016232 502.12 4041.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPS4 RPS4 489.69 3941.60
22. RAN ENSGALG00000002569 472.59 3803.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
23. RPL27A ENSGALG00000005948 446.94 3597.50 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL19 ENSGALG00000001658 438.39 3528.68 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPL15 ENSGALG00000011290 436.83 3516.12 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. SNRPD1 ENSGALG00000041334 430.61 3466.06 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
27. RPL23A ENSGALG00000003966 418.18 3366.01 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. PHB2 ENSGALG00000014567 415.85 3347.25 prohibitin 2 [Source:NCBI gene;Acc:771124]
29. TXN ENSGALG00000015704 415.85 3347.25 thioredoxin [Source:NCBI gene;Acc:396437]
30. RPS28 ENSGALG00000024398 410.41 3303.46 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPS12 ENSGALG00000013990 394.86 3178.30 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. RPL7A ENSGALG00000003197 393.31 3165.82 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL27 ENSGALG00000002837 376.98 3034.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. CIRBP ENSGALG00000030918 364.55 2934.33 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. RPSA 361.44 2909.29 ribosomal protein SA
36. gga-mir-3527 gga-mir-3527 356.00 2865.51
37. RPL26 RPL26 351.33 2827.92
38. RPS6 ENSGALG00000015082 351.33 2827.92 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. ENSGALG00000002696 ENSGALG00000002696 349.00 2809.16
40. HMGB2 ENSGALG00000010745 345.11 2777.85 high mobility group box 2 [Source:NCBI gene;Acc:396482]
41. HMGN2 HMGN2 328.79 2646.49
42. RPS21 ENSGALG00000005338 328.01 2640.21 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
43. RPL32 ENSGALG00000027142 321.02 2583.95 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. ENO1 ENSGALG00000002377 320.24 2577.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
45. RPS29 ENSGALG00000012229 315.58 2540.16 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
46. RPS15 ENSGALG00000015195 313.25 2521.40 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
47. HMGN5 ENSGALG00000007131 310.91 2502.57 high mobility group nucleosome binding domain 5, transcript variant X1
48. RPL6 ENSGALG00000004818 307.03 2471.34 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPL14 ENSGALG00000043379 304.69 2452.50 ribosomal protein L14
50. HSPA8 ENSGALG00000006512 300.03 2414.99 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
51. RPL21 ENSGALG00000027035 296.14 2383.68 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. RPL13 ENSGALG00000006179 294.59 2371.21 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
53. RPL29 ENSGALG00000026978 294.59 2371.21 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
54. RPL18A 285.26 2296.11 ribosomal protein L18a
55. ANP32B ENSGALG00000037483 283.71 2283.63 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. STMN1 ENSGALG00000001475 283.71 2283.63 stathmin 1 [Source:NCBI gene;Acc:396057]
57. PSMC6 ENSGALG00000012408 281.38 2264.88 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
58. RPL5 ENSGALG00000005922 281.38 2264.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
59. ENSGALG00000028649 ENSGALG00000028649 280.60 2258.60
60. RPLP2 ENSGALG00000034811 280.60 2258.60 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
61. MARCKSL1 ENSGALG00000032335 279.82 2252.32 MARCKS like 1 [Source:NCBI gene;Acc:770764]
62. RPL37 ENSGALG00000014833 278.27 2239.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPS14 ENSGALG00000004588 274.38 2208.53 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
64. RPS11 ENSGALG00000017299 271.27 2183.50 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. RPL36AL ENSGALG00000004952 270.49 2177.22 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPS16 ENSGALG00000026490 269.72 2171.02 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
67. RPS7 ENSGALG00000016392 268.94 2164.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
68. RPL38 ENSGALG00000001465 266.61 2145.99 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
69. RPL12 ENSGALG00000008806 264.28 2127.24 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
70. MT-ND3 MT-ND3 261.17 2102.20
71. PPIA ENSGALG00000028600 260.39 2095.93 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
72. RPL35 ENSGALG00000035677 260.39 2095.93 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
73. UBB ENSGALG00000004509 259.61 2089.65 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. MDK ENSGALG00000008367 255.73 2058.42 midkine [Source:NCBI gene;Acc:423196]
75. RPS2 ENSGALG00000005490 254.17 2045.86 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
76. RPL23 ENSGALG00000001634 253.39 2039.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. RPS15A ENSGALG00000006771 253.39 2039.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
78. CRABP-I ENSGALG00000003193 244.84 1970.76 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
79. TCEB3 ENSGALG00000034625 236.29 1901.94 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
80. EIF4G2 ENSGALG00000005587 235.52 1895.74 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
81. RPS13 ENSGALG00000006096 233.96 1883.19 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. RPS20 ENSGALG00000014432 233.96 1883.19 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. SET ENSGALG00000004701 228.52 1839.40 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
84. H3-IX H3-IX 224.63 1808.09
85. MT-ND1 MT-ND1 223.86 1801.89
86. ATP5G3 217.64 1751.82 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. AKAP12 ENSGALG00000036240 215.31 1733.07 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
88. PNRC1 ENSGALG00000015780 215.31 1733.07 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
89. CRHOA CRHOA 211.42 1701.76
90. RPS25 ENSGALG00000007699 211.42 1701.76 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. MT-ND6 MT-ND6 207.53 1670.45
92. NME2 ENSGALG00000002932 205.98 1657.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
93. BLMH ENSGALG00000004259 204.43 1645.49 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
94. RPL7 ENSGALG00000035252 202.09 1626.66 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
95. RPL3 ENSGALG00000012172 199.76 1607.90 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
96. RPL24 ENSGALG00000015339 193.54 1557.84 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
97. SSR1 ENSGALG00000012798 191.99 1545.36 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
98. ENSGALG00000018386 ENSGALG00000018386 189.66 1526.61
99. SLC25A6_1 ENSGALG00000016691 189.66 1526.61 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. H2AFZ ENSGALG00000014023 188.10 1514.05 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA