Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s40.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5557.58 44746.85
2. ENSGALG00000018384 ENSGALG00000018384 2587.61 20834.14
3. ENSGALG00000018386 ENSGALG00000018386 1787.32 14390.60
4. MT-ATP6 MT-ATP6 1636.15 13173.46
5. EEF1A EEF1A 1440.53 11598.43
6. HBZ ENSGALG00000023740 1227.11 9880.07 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 951.46 7660.68 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPL8 ENSGALG00000016232 826.97 6658.35 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
9. MT-CYB MT-CYB 800.29 6443.53
10. MT-ND5 MT-ND5 791.40 6371.96
11. RPS3A ENSGALG00000010077 782.51 6300.38 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
12. MT-ND4 MT-ND4 720.26 5799.17
13. RPL6 ENSGALG00000004818 649.13 5226.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
14. RPS10 ENSGALG00000002813 577.99 4653.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
15. MT-CO1 MT-CO1 569.10 4582.11
16. RPS8 ENSGALG00000010124 569.10 4582.11 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. HBE 551.31 4438.87 hemoglobin subunit epsilon
18. gga-mir-3533 ENSGALG00000027736 551.31 4438.87 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
19. gga-mir-3527 gga-mir-3527 533.53 4295.72
20. RPL19 ENSGALG00000001658 515.74 4152.48 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPL7A ENSGALG00000003197 489.07 3937.75 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPS23 ENSGALG00000015617 471.28 3794.51 ribosomal protein S23
23. RPLP1 ENSGALG00000030878 462.39 3722.93 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. GAPDH ENSGALG00000014442 417.93 3364.96 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
25. TMSB4X ENSGALG00000026383 417.93 3364.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. CIRBP ENSGALG00000030918 400.15 3221.81 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. HBG1 HBG1 400.15 3221.81
28. RPL37 ENSGALG00000014833 400.15 3221.81 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
29. RPL38 ENSGALG00000001465 400.15 3221.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
30. MT-ND2 MT-ND2 391.25 3150.15
31. RPS6 ENSGALG00000015082 391.25 3150.15 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
32. RPL26 RPL26 382.36 3078.57
33. RPLP0 ENSGALG00000023294 382.36 3078.57 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
34. RPL15 ENSGALG00000011290 373.47 3006.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
35. RPL27 ENSGALG00000002837 373.47 3006.99 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. RPS4 RPS4 373.47 3006.99
37. RPL21 ENSGALG00000027035 355.69 2863.84 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. RPL27A ENSGALG00000005948 355.69 2863.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPLP2 ENSGALG00000034811 355.69 2863.84 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
40. PSMC6 ENSGALG00000012408 346.79 2792.18 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
41. RPL23 ENSGALG00000001634 346.79 2792.18 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. RPS11 ENSGALG00000017299 337.90 2720.60 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPL13 ENSGALG00000006179 329.01 2649.02 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
44. RPL4 ENSGALG00000007711 329.01 2649.02 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
45. TXN ENSGALG00000015704 329.01 2649.02 thioredoxin [Source:NCBI gene;Acc:396437]
46. NME2 ENSGALG00000002932 311.22 2505.79 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
47. RAN ENSGALG00000002569 311.22 2505.79 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
48. RPL29 ENSGALG00000026978 311.22 2505.79 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
49. RPS28 ENSGALG00000024398 311.22 2505.79 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
50. RPL14 ENSGALG00000043379 302.33 2434.21 ribosomal protein L14
51. RPL23A ENSGALG00000003966 302.33 2434.21 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
52. RPL36AL ENSGALG00000004952 302.33 2434.21 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
53. RPL5 ENSGALG00000005922 302.33 2434.21 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
54. RPS21 ENSGALG00000005338 293.44 2362.63 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
55. RPL32 ENSGALG00000027142 284.55 2291.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. RPS25 ENSGALG00000007699 284.55 2291.05 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
57. ENSGALG00000002696 ENSGALG00000002696 275.66 2219.48
58. RPS12 ENSGALG00000013990 275.66 2219.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
59. RPS14 ENSGALG00000004588 275.66 2219.48 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. CALM CALM 266.76 2147.82
61. HMGN5 ENSGALG00000007131 266.76 2147.82 high mobility group nucleosome binding domain 5, transcript variant X1
62. MDK ENSGALG00000008367 266.76 2147.82 midkine [Source:NCBI gene;Acc:423196]
63. RPS15 ENSGALG00000015195 266.76 2147.82 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
64. RPS15A ENSGALG00000006771 266.76 2147.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
65. RPS3 ENSGALG00000017330 266.76 2147.82 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
66. MT-ND6 MT-ND6 257.87 2076.24
67. RPS29 ENSGALG00000012229 257.87 2076.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
68. RPSA 257.87 2076.24 ribosomal protein SA
69. RPS24 ENSGALG00000004871 248.98 2004.66 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
70. EEF1B2 ENSGALG00000008590 240.09 1933.08 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
71. MT-ND3 MT-ND3 240.09 1933.08
72. RPL12 ENSGALG00000008806 240.09 1933.08 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. RPS2 ENSGALG00000005490 240.09 1933.08 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
74. ANP32B ENSGALG00000037483 231.20 1861.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. HSPA8 ENSGALG00000006512 231.20 1861.51 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
76. PPIA ENSGALG00000028600 231.20 1861.51 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
77. RPS20 ENSGALG00000014432 231.20 1861.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
78. CRHOA CRHOA 222.30 1789.85
79. EIF5A2 ENSGALG00000009309 222.30 1789.85 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. MT-ND1 MT-ND1 222.30 1789.85
81. NUCKS1 ENSGALG00000000708 222.30 1789.85 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
82. PHB2 ENSGALG00000014567 222.30 1789.85 prohibitin 2 [Source:NCBI gene;Acc:771124]
83. RPL24 ENSGALG00000015339 222.30 1789.85 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
84. TCEB3 ENSGALG00000034625 222.30 1789.85 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
85. RPS16 ENSGALG00000026490 213.41 1718.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
86. RPS7 ENSGALG00000016392 213.41 1718.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
87. SET ENSGALG00000004701 213.41 1718.27 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
88. UBB ENSGALG00000004509 213.41 1718.27 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. ENSGALG00000028649 ENSGALG00000028649 204.52 1646.69
90. GNB2L1 ENSGALG00000000122 204.52 1646.69 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
91. HSP90AA1 ENSGALG00000033212 204.52 1646.69 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
92. HSP90B1 ENSGALG00000033789 204.52 1646.69 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
93. MT-ATP8 MT-ATP8 204.52 1646.69
94. PRELID1 ENSGALG00000002990 204.52 1646.69 PRELI domain containing 1 [Source:NCBI gene;Acc:395819]
95. RPL10A ENSGALG00000002644 204.52 1646.69 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. ZNF644 ENSGALG00000034253 204.52 1646.69 zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
97. HMGB1 ENSGALG00000042875 195.63 1575.11 high mobility group box 1 [Source:NCBI gene;Acc:395724]
98. HMGN2 HMGN2 195.63 1575.11
99. RDH10 ENSGALG00000034346 195.63 1575.11 retinol dehydrogenase 10 [Source:NCBI gene;Acc:420183]
100. RPL18A 195.63 1575.11 ribosomal protein L18a
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA