Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s4.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6557.37 52780.27
2. MT-ATP6 MT-ATP6 1915.09 15414.56
3. EEF1A EEF1A 1505.45 12117.37
4. TMSB4X ENSGALG00000026383 1118.13 8999.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. RPS3A ENSGALG00000010077 914.11 7357.67 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 871.07 7011.24 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPS10 ENSGALG00000002813 855.14 6883.02 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ND5 MT-ND5 827.24 6658.45
9. MT-CO1 MT-CO1 778.63 6267.19
10. ENSGALG00000018384 ENSGALG00000018384 701.32 5644.92
11. MT-CYB MT-CYB 700.53 5638.57
12. RPS23 ENSGALG00000015617 668.65 5381.96 ribosomal protein S23
13. gga-mir-3533 ENSGALG00000027736 652.71 5253.66 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPLP1 ENSGALG00000030878 645.54 5195.95 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
15. MT-ND4 MT-ND4 643.94 5183.07
16. RPLP0 ENSGALG00000023294 596.12 4798.17 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. GAPDH ENSGALG00000014442 573.81 4618.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS8 ENSGALG00000010124 549.90 4426.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPL4 ENSGALG00000007711 540.34 4349.20 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. RPS12 ENSGALG00000013990 525.20 4227.33 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL7A ENSGALG00000003197 514.04 4137.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL8 ENSGALG00000016232 502.88 4047.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RAN ENSGALG00000002569 490.93 3951.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
24. RPL27 ENSGALG00000002837 478.97 3855.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPL27A ENSGALG00000005948 449.48 3617.86 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL15 ENSGALG00000011290 443.91 3573.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL23A ENSGALG00000003966 443.11 3566.59 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. ENSGALG00000018386 ENSGALG00000018386 431.15 3470.33
29. RPS28 ENSGALG00000024398 431.15 3470.33 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
30. RPL19 ENSGALG00000001658 422.39 3399.82 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPS4 RPS4 420.79 3386.94
32. ENSGALG00000002696 ENSGALG00000002696 418.40 3367.70
33. RPL26 RPL26 415.21 3342.02
34. gga-mir-3527 gga-mir-3527 411.23 3309.99
35. RPS11 ENSGALG00000017299 407.25 3277.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. TXN ENSGALG00000015704 404.06 3252.28 thioredoxin [Source:NCBI gene;Acc:396437]
37. RPS6 ENSGALG00000015082 388.92 3130.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
38. STMN1 ENSGALG00000001475 382.54 3079.06 stathmin 1 [Source:NCBI gene;Acc:396057]
39. RPS21 ENSGALG00000005338 380.15 3059.83 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPS15 ENSGALG00000015195 376.96 3034.15 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
41. RPL29 ENSGALG00000026978 376.16 3027.71 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. SNRPD1 ENSGALG00000041334 375.37 3021.35 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. CIRBP ENSGALG00000030918 374.57 3014.91 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
44. PHB2 ENSGALG00000014567 374.57 3014.91 prohibitin 2 [Source:NCBI gene;Acc:771124]
45. RPS29 ENSGALG00000012229 365.01 2937.97 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
46. TCEB3 ENSGALG00000034625 363.41 2925.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
47. RPL5 ENSGALG00000005922 355.44 2860.94 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
48. RPL32 ENSGALG00000027142 350.66 2822.46 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPSA 336.32 2707.04 ribosomal protein SA
50. RPLP2 ENSGALG00000034811 330.74 2662.13 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
51. RPS7 ENSGALG00000016392 327.55 2636.45 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
52. MARCKSL1 ENSGALG00000032335 320.38 2578.74 MARCKS like 1 [Source:NCBI gene;Acc:770764]
53. RPS14 ENSGALG00000004588 318.78 2565.86 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
54. RPL38 ENSGALG00000001465 317.19 2553.06 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. MT-ND3 MT-ND3 313.20 2520.95
56. RPL14 ENSGALG00000043379 306.03 2463.24 ribosomal protein L14
57. HMGB2 ENSGALG00000010745 305.23 2456.80 high mobility group box 2 [Source:NCBI gene;Acc:396482]
58. RPS15A ENSGALG00000006771 305.23 2456.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
59. PPIA ENSGALG00000028600 295.67 2379.85 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
60. RPS16 ENSGALG00000026490 291.69 2347.81 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPL36AL ENSGALG00000004952 290.09 2334.93 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
62. RPL37 ENSGALG00000014833 287.70 2315.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. ENO1 ENSGALG00000002377 286.11 2302.90 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
64. ENSGALG00000028649 ENSGALG00000028649 286.11 2302.90
65. RPL13 ENSGALG00000006179 286.11 2302.90 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. CRABP-I ENSGALG00000003193 282.12 2270.78 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
67. HMGN2 HMGN2 280.53 2257.99
68. RPL12 ENSGALG00000008806 278.14 2238.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
69. RPS25 ENSGALG00000007699 273.36 2200.27 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. RPL6 ENSGALG00000004818 269.37 2168.16 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. HSPA8 ENSGALG00000006512 268.57 2161.72 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
72. HMGN5 ENSGALG00000007131 264.59 2129.68 high mobility group nucleosome binding domain 5, transcript variant X1
73. RPS13 ENSGALG00000006096 264.59 2129.68 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. PSMC6 ENSGALG00000012408 263.00 2116.89 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
75. RPL21 ENSGALG00000027035 261.40 2104.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. RPL35 ENSGALG00000035677 259.81 2091.21 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
77. ANP32B ENSGALG00000037483 256.62 2065.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. RPL18A 256.62 2065.53 ribosomal protein L18a
79. RPS2 ENSGALG00000005490 256.62 2065.53 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
80. RPL23 ENSGALG00000001634 249.45 2007.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. ATP5G3 247.85 1994.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
82. MT-ND6 MT-ND6 246.26 1982.15
83. MT-ND1 MT-ND1 243.87 1962.91
84. NME2 ENSGALG00000002932 243.07 1956.47 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
85. UBB ENSGALG00000004509 233.51 1879.52 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. EIF4G2 ENSGALG00000005587 231.12 1860.28 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
87. GNB2L1 ENSGALG00000000122 224.74 1808.93 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
88. LDHB ENSGALG00000035836 219.96 1770.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
89. RPL7 ENSGALG00000035252 211.99 1706.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
90. BLMH ENSGALG00000004259 209.60 1687.07 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
91. RPL24 ENSGALG00000015339 209.60 1687.07 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
92. MDK ENSGALG00000008367 208.01 1674.27 midkine [Source:NCBI gene;Acc:423196]
93. SET ENSGALG00000004701 204.82 1648.60 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. SLC25A6_1 ENSGALG00000016691 204.82 1648.60 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. RPS24 ENSGALG00000004871 203.22 1635.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
96. RPS3 ENSGALG00000017330 200.83 1616.48 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
97. H3-IX H3-IX 199.24 1603.68
98. RPS27A ENSGALG00000036790 192.86 1552.33 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
99. CRHOA CRHOA 191.27 1539.53
100. EEF1B2 ENSGALG00000008590 189.68 1526.73 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA