Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s34.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8445.69 67979.39
2. EEF1A EEF1A 2201.21 17717.55
3. RPS3A ENSGALG00000010077 1239.63 9977.79 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
4. MT-ATP6 MT-ATP6 1208.73 9729.07
5. RPS10 ENSGALG00000002813 841.87 6776.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. MT-CYB MT-CYB 772.35 6216.65
7. ENSGALG00000018384 ENSGALG00000018384 745.32 5999.08
8. RPLP1 ENSGALG00000030878 710.57 5719.38 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPL8 ENSGALG00000016232 656.50 5284.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 652.64 5253.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS8 ENSGALG00000010124 637.19 5128.75 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. RPL7A ENSGALG00000003197 590.85 4755.75 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
13. MT-CO1 MT-CO1 575.40 4631.40
14. RPL27A ENSGALG00000005948 571.54 4600.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. MT-ND5 MT-ND5 552.23 4444.90
16. RPS23 ENSGALG00000015617 552.23 4444.90 ribosomal protein S23
17. TXN ENSGALG00000015704 552.23 4444.90 thioredoxin [Source:NCBI gene;Acc:396437]
18. MT-ND4 MT-ND4 517.48 4165.20
19. HBZ ENSGALG00000023740 513.62 4134.13 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
20. RPL19 ENSGALG00000001658 486.58 3916.48 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPS6 ENSGALG00000015082 486.58 3916.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. MT-ND3 MT-ND3 475.00 3823.28
23. RPLP0 ENSGALG00000023294 463.41 3729.99 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. RPS15 ENSGALG00000015195 463.41 3729.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
25. RPS4 RPS4 451.83 3636.78
26. gga-mir-3533 ENSGALG00000027736 451.83 3636.78 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
27. GAPDH ENSGALG00000014442 432.52 3481.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
28. ENSGALG00000002696 ENSGALG00000002696 428.66 3450.29
29. RPL21 ENSGALG00000027035 424.79 3419.14 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
30. RPS12 ENSGALG00000013990 417.07 3357.00 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
31. RPL4 ENSGALG00000007711 409.35 3294.86 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
32. RPL6 ENSGALG00000004818 390.04 3139.43 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. RPL26 RPL26 386.18 3108.36
34. ENSGALG00000018386 ENSGALG00000018386 378.45 3046.15
35. RPL13 ENSGALG00000006179 374.59 3015.08 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
36. RPL36AL ENSGALG00000004952 374.59 3015.08 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
37. RPS28 ENSGALG00000024398 370.73 2984.01 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
38. RPS15A ENSGALG00000006771 355.28 2859.65 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. TMSB4X ENSGALG00000026383 351.42 2828.58 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
40. RPL32 ENSGALG00000027142 347.56 2797.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
41. RPS14 ENSGALG00000004588 347.56 2797.51 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
42. CIRBP ENSGALG00000030918 343.70 2766.44 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
43. RPL29 ENSGALG00000026978 343.70 2766.44 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPL15 ENSGALG00000011290 335.97 2704.22 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
45. RPL23A ENSGALG00000003966 335.97 2704.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. RAN ENSGALG00000002569 332.11 2673.15 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
47. RPSA 332.11 2673.15 ribosomal protein SA
48. RPS21 ENSGALG00000005338 328.25 2642.09 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
49. RPL5 ENSGALG00000005922 324.39 2611.02 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
50. RPL27 ENSGALG00000002837 320.53 2579.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPL38 ENSGALG00000001465 312.80 2517.73 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RPS7 ENSGALG00000016392 308.94 2486.66 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. gga-mir-3527 gga-mir-3527 308.94 2486.66
54. PHB2 ENSGALG00000014567 301.22 2424.52 prohibitin 2 [Source:NCBI gene;Acc:771124]
55. RPL10A ENSGALG00000002644 297.36 2393.45 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
56. RPL18A 297.36 2393.45 ribosomal protein L18a
57. CRHOA CRHOA 293.49 2362.30
58. HSP90B1 ENSGALG00000033789 289.63 2331.23 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
59. RPL23 ENSGALG00000001634 289.63 2331.23 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
60. ENO1 ENSGALG00000002377 281.91 2269.09 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
61. HMGN5 ENSGALG00000007131 281.91 2269.09 high mobility group nucleosome binding domain 5, transcript variant X1
62. RPL12 ENSGALG00000008806 281.91 2269.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
63. RPL37 ENSGALG00000014833 281.91 2269.09 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
64. RPL14 ENSGALG00000043379 278.05 2238.03 ribosomal protein L14
65. RPS16 ENSGALG00000026490 278.05 2238.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
66. RPS3 ENSGALG00000017330 270.32 2175.81 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
67. TCEB3 ENSGALG00000034625 266.46 2144.74 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
68. SNRPD1 ENSGALG00000041334 262.60 2113.67 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
69. DYL1 ENSGALG00000007153 251.02 2020.46 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
70. RPLP2 ENSGALG00000034811 251.02 2020.46 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
71. RPS29 ENSGALG00000012229 251.02 2020.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
72. RPL7 ENSGALG00000035252 247.15 1989.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. RPS25 ENSGALG00000007699 247.15 1989.31 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. EEF1B2 ENSGALG00000008590 243.29 1958.24 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
75. ENSGALG00000028992 ENSGALG00000028992 239.43 1927.17
76. MYL12A ENSGALG00000014854 235.57 1896.10 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
77. UBB ENSGALG00000004509 235.57 1896.10 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. EEF1D 231.71 1865.03 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. RPS13 ENSGALG00000006096 231.71 1865.03 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. STMN1 ENSGALG00000001475 231.71 1865.03 stathmin 1 [Source:NCBI gene;Acc:396057]
81. H3-IX H3-IX 223.98 1802.82
82. MT-ND2 MT-ND2 223.98 1802.82
83. PSMC6 ENSGALG00000012408 223.98 1802.82 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
84. MT-ND1 MT-ND1 220.12 1771.75
85. RPL35 ENSGALG00000035677 220.12 1771.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
86. RPS2 ENSGALG00000005490 220.12 1771.75 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
87. MDK ENSGALG00000008367 216.26 1740.68 midkine [Source:NCBI gene;Acc:423196]
88. CNN3 ENSGALG00000005597 204.67 1647.39 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
89. COX7C ENSGALG00000027963 204.67 1647.39 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
90. HBE 204.67 1647.39 hemoglobin subunit epsilon
91. ANP32B ENSGALG00000037483 200.81 1616.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
92. EIF4G2 ENSGALG00000005587 200.81 1616.32 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
93. H3-IX_1 H3-IX_1 200.81 1616.32
94. HMGN2 HMGN2 200.81 1616.32
95. ATP6V1G1 ENSGALG00000007190 196.95 1585.25 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
96. PNRC1 ENSGALG00000015780 196.95 1585.25 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
97. RPS24 ENSGALG00000004871 196.95 1585.25 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
98. TPT1 ENSGALG00000028872 196.95 1585.25 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. HBG1 HBG1 193.09 1554.18
100. RPL24 ENSGALG00000015339 193.09 1554.18 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA