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Experiment Chicken_E4_posterior_slice_1, section s3.

Sample reads: 124,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4226.98 34021.35
2. EEF1A EEF1A 1543.71 12424.73
3. MT-ATP6 MT-ATP6 1311.96 10559.47
4. TMSB4X ENSGALG00000026383 1094.90 8812.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. RPS3A ENSGALG00000010077 1060.98 8539.42 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 959.80 7725.06 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPLP1 ENSGALG00000030878 858.06 6906.20 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. RPS10 ENSGALG00000002813 843.93 6792.47 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. gga-mir-3533 ENSGALG00000027736 770.44 6200.98 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 759.70 6114.54 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPLP0 ENSGALG00000023294 658.52 5300.18 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. RPL4 ENSGALG00000007711 646.65 5204.64 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS8 ENSGALG00000010124 639.30 5145.48 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPL8 ENSGALG00000016232 622.91 5013.56 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RAN ENSGALG00000002569 599.17 4822.49 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
16. RPL15 ENSGALG00000011290 589.00 4740.64 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPS23 ENSGALG00000015617 581.08 4676.89 ribosomal protein S23
18. MT-CO1 MT-CO1 560.73 4513.10
19. MT-CYB MT-CYB 555.65 4472.21
20. RPS12 ENSGALG00000013990 499.12 4017.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL7A ENSGALG00000003197 496.29 3994.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPS4 RPS4 492.90 3967.16
23. MT-ND5 MT-ND5 482.16 3880.72
24. RPL27 ENSGALG00000002837 474.81 3821.56 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPS28 ENSGALG00000024398 449.94 3621.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. MT-ND4 MT-ND4 439.20 3534.95
27. RPL19 ENSGALG00000001658 438.64 3530.45 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. RPL23A ENSGALG00000003966 436.38 3512.26 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. PHB2 ENSGALG00000014567 434.68 3498.57 prohibitin 2 [Source:NCBI gene;Acc:771124]
30. TXN ENSGALG00000015704 431.86 3475.88 thioredoxin [Source:NCBI gene;Acc:396437]
31. SNRPD1 ENSGALG00000041334 424.51 3416.72 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
32. RPL27A ENSGALG00000005948 420.55 3384.85 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. CIRBP ENSGALG00000030918 408.68 3289.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. HMGB2 ENSGALG00000010745 407.55 3280.21 high mobility group box 2 [Source:NCBI gene;Acc:396482]
35. RPSA 403.59 3248.34 ribosomal protein SA
36. RPLP2 ENSGALG00000034811 395.68 3184.68 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
37. ENSGALG00000002696 ENSGALG00000002696 391.16 3148.30
38. MDK ENSGALG00000008367 382.11 3075.46 midkine [Source:NCBI gene;Acc:423196]
39. RPL26 RPL26 380.98 3066.36
40. RPL5 ENSGALG00000005922 375.89 3025.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
41. RPL29 ENSGALG00000026978 371.94 2993.60 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPL32 ENSGALG00000027142 371.37 2989.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
43. RPS6 ENSGALG00000015082 365.72 2943.54 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. RPL13 ENSGALG00000006179 361.76 2911.67 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
45. HMGN2 HMGN2 355.55 2861.69
46. ENSGALG00000018384 ENSGALG00000018384 354.98 2857.10
47. RPL37 ENSGALG00000014833 352.15 2834.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPS15 ENSGALG00000015195 351.02 2825.23 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
49. RPS11 ENSGALG00000017299 345.94 2784.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPS29 ENSGALG00000012229 341.98 2752.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
51. RPL36AL ENSGALG00000004952 340.85 2743.37 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPL14 ENSGALG00000043379 340.28 2738.78 ribosomal protein L14
53. RPL18A 332.94 2679.71 ribosomal protein L18a
54. RPS21 ENSGALG00000005338 332.94 2679.71 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
55. ENO1 ENSGALG00000002377 327.28 2634.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
56. RPL6 ENSGALG00000004818 323.33 2602.36 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. RPS2 ENSGALG00000005490 315.41 2538.61 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
58. CRABP-I ENSGALG00000003193 309.19 2488.55 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
59. HSPA8 ENSGALG00000006512 308.63 2484.05 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
60. STMN1 ENSGALG00000001475 308.06 2479.46 stathmin 1 [Source:NCBI gene;Acc:396057]
61. PPIA ENSGALG00000028600 305.24 2456.76 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. PSMC6 ENSGALG00000012408 302.41 2433.98 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
63. RPS13 ENSGALG00000006096 301.28 2424.89 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
64. gga-mir-3527 gga-mir-3527 297.89 2397.60
65. RPL23 ENSGALG00000001634 290.54 2338.45 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPS25 ENSGALG00000007699 289.41 2329.35 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
67. RPL12 ENSGALG00000008806 286.02 2302.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. ENSGALG00000028649 ENSGALG00000028649 285.45 2297.48
69. RPS15A ENSGALG00000006771 282.06 2270.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
70. ENSGALG00000018386 ENSGALG00000018386 280.93 2261.10
71. RPS14 ENSGALG00000004588 280.37 2256.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. HMGN5 ENSGALG00000007131 279.80 2252.00 high mobility group nucleosome binding domain 5, transcript variant X1
73. TCEB3 ENSGALG00000034625 278.11 2238.40 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPL38 ENSGALG00000001465 275.84 2220.13 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. RPS7 ENSGALG00000016392 275.28 2215.62 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
76. RPS16 ENSGALG00000026490 274.71 2211.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
77. RPL21 ENSGALG00000027035 274.15 2206.53 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
78. RPL35 ENSGALG00000035677 265.10 2133.69 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
79. ANP32B ENSGALG00000037483 248.15 1997.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
80. UBB ENSGALG00000004509 247.02 1988.17 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
81. GNB2L1 ENSGALG00000000122 246.45 1983.58 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
82. ATP5G3 244.76 1969.98 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
83. MT-ND3 MT-ND3 228.93 1842.57
84. CRHOA CRHOA 225.54 1815.29
85. NME2 ENSGALG00000002932 223.84 1801.60 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
86. RPS3 ENSGALG00000017330 220.45 1774.32 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
87. RPS20 ENSGALG00000014432 217.62 1751.54 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. H3-IX H3-IX 216.49 1742.45
89. ALDOC ENSGALG00000026077 214.23 1724.26 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
90. SET ENSGALG00000004701 214.23 1724.26 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
91. RPL24 ENSGALG00000015339 212.54 1710.65 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
92. MARCKSL1 ENSGALG00000032335 208.58 1678.78 MARCKS like 1 [Source:NCBI gene;Acc:770764]
93. SLC25A6_1 ENSGALG00000016691 202.36 1628.72 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. LDHB ENSGALG00000035836 200.67 1615.12 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. HNRNPDL ENSGALG00000023199 200.10 1610.53 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. RPL10A ENSGALG00000002644 199.54 1606.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. EIF4G2 ENSGALG00000005587 198.97 1601.43 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
98. HSP90AB1 ENSGALG00000010175 198.40 1596.85 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
99. MIF ENSGALG00000006326 195.58 1574.15 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
100. RPS27A ENSGALG00000036790 193.88 1560.47 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA