Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s28.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6429.77 51755.61
2. GAL10 GAL10 2005.58 16143.66
3. MT-ATP6 MT-ATP6 1559.75 12555.01
4. EEF1A EEF1A 1260.24 10144.14
5. ENSGALG00000018384 ENSGALG00000018384 1225.37 9863.46
6. RPS3A ENSGALG00000010077 937.49 7546.21 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 932.02 7502.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. GAPDH ENSGALG00000014442 880.73 7089.32 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPS10 ENSGALG00000002813 799.36 6434.35 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPLP1 ENSGALG00000030878 791.16 6368.34 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
11. RPLP0 ENSGALG00000023294 776.11 6247.20 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. MT-ND5 MT-ND5 688.59 5542.72
13. gga-mir-3533 ENSGALG00000027736 667.39 5372.07 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPL4 ENSGALG00000007711 612.00 4926.22 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPS23 ENSGALG00000015617 607.90 4893.21 ribosomal protein S23
16. RPL8 ENSGALG00000016232 599.69 4827.13 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. MT-CYB MT-CYB 579.18 4662.04
18. RPL15 ENSGALG00000011290 559.35 4502.42 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS8 ENSGALG00000010124 557.98 4491.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPS4 RPS4 513.53 4133.59
21. MT-ND4 MT-ND4 497.12 4001.50
22. RPL7A ENSGALG00000003197 490.97 3952.00 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPSA 469.77 3781.35 ribosomal protein SA
24. TXN ENSGALG00000015704 466.35 3753.82 thioredoxin [Source:NCBI gene;Acc:396437]
25. ENSGALG00000018386 ENSGALG00000018386 449.94 3621.73
26. MT-CO1 MT-CO1 438.32 3528.20
27. TMSB4X ENSGALG00000026383 432.16 3478.62 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
28. RPLP2 ENSGALG00000034811 431.48 3473.14 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
29. RPL27 ENSGALG00000002837 430.79 3467.59 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPS21 ENSGALG00000005338 419.85 3379.53 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. MDK ENSGALG00000008367 416.43 3352.00 midkine [Source:NCBI gene;Acc:423196]
32. RPL6 ENSGALG00000004818 404.81 3258.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. RPL32 ENSGALG00000027142 399.34 3214.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPL19 ENSGALG00000001658 395.92 3186.91 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. PPIA ENSGALG00000028600 391.82 3153.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
36. ANXA1 ENSGALG00000015148 391.13 3148.35 annexin A1 [Source:NCBI gene;Acc:404271]
37. PHB2 ENSGALG00000014567 386.35 3109.87 prohibitin 2 [Source:NCBI gene;Acc:771124]
38. RPL27A ENSGALG00000005948 384.98 3098.85 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPS6 ENSGALG00000015082 380.88 3065.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
40. RPL26 RPL26 377.46 3038.32
41. RPL23A ENSGALG00000003966 367.88 2961.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
42. ENSGALG00000002696 ENSGALG00000002696 363.78 2928.20
43. RPS12 ENSGALG00000013990 363.10 2922.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. RAN ENSGALG00000002569 351.47 2829.11 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPL29 ENSGALG00000026978 348.74 2807.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
46. RPS11 ENSGALG00000017299 345.32 2779.61 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. RPS29 ENSGALG00000012229 332.33 2675.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
48. gga-mir-3527 gga-mir-3527 330.96 2664.02
49. RPL37 ENSGALG00000014833 327.54 2636.49 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. RPL38 ENSGALG00000001465 318.65 2564.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
51. RPS28 ENSGALG00000024398 315.23 2537.40 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
52. SNRPD1 ENSGALG00000041334 313.18 2520.90 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
53. RPL5 ENSGALG00000005922 311.81 2509.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
54. HBZ ENSGALG00000023740 302.24 2432.84 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
55. GNB2L1 ENSGALG00000000122 301.56 2427.37 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPL21 ENSGALG00000027035 301.56 2427.37 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. RPL18A 291.30 2344.78 ribosomal protein L18a
58. RPS14 ENSGALG00000004588 289.93 2333.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPS15 ENSGALG00000015195 289.93 2333.75 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
60. RPL14 ENSGALG00000043379 289.25 2328.28 ribosomal protein L14
61. ATP5G3 287.88 2317.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
62. RPL36AL ENSGALG00000004952 282.41 2273.22 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
63. RPS15A ENSGALG00000006771 282.41 2273.22 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. MT-ND3 MT-ND3 281.73 2267.75
65. RPL13 ENSGALG00000006179 281.73 2267.75 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. RPS2 ENSGALG00000005490 281.73 2267.75 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
67. CIRBP ENSGALG00000030918 280.36 2256.72 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. RPS7 ENSGALG00000016392 274.20 2207.14 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
69. RPS13 ENSGALG00000006096 266.68 2146.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. ENO1 ENSGALG00000002377 265.31 2135.58 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. NME2 ENSGALG00000002932 264.63 2130.11 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
72. RPS25 ENSGALG00000007699 263.26 2119.08 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. RPL23 ENSGALG00000001634 259.84 2091.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
74. RPS16 ENSGALG00000026490 257.11 2069.57 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
75. ENSGALG00000028649 ENSGALG00000028649 252.32 2031.02
76. RPL12 ENSGALG00000008806 250.95 2019.99 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
77. HMGN5 ENSGALG00000007131 249.59 2009.04 high mobility group nucleosome binding domain 5, transcript variant X1
78. ANP32B ENSGALG00000037483 247.54 1992.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
79. EEF1B2 ENSGALG00000008590 246.17 1981.51 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
80. CRHOA CRHOA 242.07 1948.51
81. H3-IX H3-IX 239.33 1926.46
82. RPL35 ENSGALG00000035677 233.86 1882.43 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
83. EEF1D 232.49 1871.40 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. HMGN2 HMGN2 229.76 1849.42
85. STMN1 ENSGALG00000001475 229.07 1843.87 stathmin 1 [Source:NCBI gene;Acc:396057]
86. TCEB3 ENSGALG00000034625 228.39 1838.40 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
87. RPS20 ENSGALG00000014432 224.97 1810.87 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. UBB ENSGALG00000004509 222.92 1794.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. MT-ND1 MT-ND1 222.23 1788.81
90. HMGB2 ENSGALG00000010745 219.50 1766.84 high mobility group box 2 [Source:NCBI gene;Acc:396482]
91. HSPA8 ENSGALG00000006512 219.50 1766.84 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. PNRC1 ENSGALG00000015780 219.50 1766.84 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
93. RPL24 ENSGALG00000015339 210.61 1695.28 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
94. SET ENSGALG00000004701 210.61 1695.28 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. SLC25A6_1 ENSGALG00000016691 202.40 1629.19 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. RPS3 ENSGALG00000017330 198.99 1601.74 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
97. BLMH ENSGALG00000004259 198.30 1596.19 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
98. NCL ENSGALG00000032930 198.30 1596.19 nucleolin [Source:NCBI gene;Acc:396201]
99. RPL3 ENSGALG00000012172 193.52 1557.71 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. RPS27A ENSGALG00000036790 193.52 1557.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA