Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s27.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5375.82 43270.55
2. GAL10 GAL10 1855.69 14936.65
3. EEF1A EEF1A 1810.66 14574.20
4. MT-ATP6 MT-ATP6 1589.23 12791.88
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 965.19 7768.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS10 ENSGALG00000002813 823.75 6630.45 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. GAPDH ENSGALG00000014442 807.86 6502.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. RPLP1 ENSGALG00000030878 790.38 6361.85 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPS3A ENSGALG00000010077 788.79 6349.05 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
10. RPS23 ENSGALG00000015617 768.13 6182.76 ribosomal protein S23
11. gga-mir-3533 ENSGALG00000027736 735.81 5922.61 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND5 MT-ND5 708.27 5700.94
13. RPL4 ENSGALG00000007711 640.99 5159.40 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPLP0 ENSGALG00000023294 635.69 5116.74 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. MT-CYB MT-CYB 615.56 4954.71
16. RPS8 ENSGALG00000010124 602.32 4848.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. MT-CO1 MT-CO1 576.89 4643.45
18. RPL8 ENSGALG00000016232 561.00 4515.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MT-ND4 MT-ND4 550.93 4434.49
20. RPL15 ENSGALG00000011290 504.31 4059.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS4 RPS4 490.54 3948.41
22. RPL7A ENSGALG00000003197 481.01 3871.70 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPSA 455.58 3667.01 ribosomal protein SA
24. RPL19 ENSGALG00000001658 455.05 3662.75 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. ANXA1 ENSGALG00000015148 446.57 3594.49 annexin A1 [Source:NCBI gene;Acc:404271]
26. TXN ENSGALG00000015704 443.39 3568.89 thioredoxin [Source:NCBI gene;Acc:396437]
27. ENSGALG00000018384 ENSGALG00000018384 422.73 3402.60
28. TMSB4X ENSGALG00000026383 414.26 3334.42 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
29. RPS6 ENSGALG00000015082 410.55 3304.56 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPL27 ENSGALG00000002837 405.78 3266.17 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPLP2 ENSGALG00000034811 404.72 3257.63 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
32. RPL27A ENSGALG00000005948 402.60 3240.57 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL32 ENSGALG00000027142 395.19 3180.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPS12 ENSGALG00000013990 389.89 3138.27 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
35. RAN ENSGALG00000002569 385.65 3104.14 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPL36AL ENSGALG00000004952 385.12 3099.87 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
37. PHB2 ENSGALG00000014567 381.94 3074.28 prohibitin 2 [Source:NCBI gene;Acc:771124]
38. RPL6 ENSGALG00000004818 372.94 3001.83 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
39. gga-mir-3527 gga-mir-3527 372.41 2997.57
40. SNRPD1 ENSGALG00000041334 366.58 2950.64 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
41. RPL23A ENSGALG00000003966 361.28 2907.98 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
42. RPL5 ENSGALG00000005922 359.17 2891.00 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
43. ENSGALG00000002696 ENSGALG00000002696 357.05 2873.93
44. RPS21 ENSGALG00000005338 346.45 2788.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
45. RPS14 ENSGALG00000004588 338.51 2724.70 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
46. RPL37 ENSGALG00000014833 337.45 2716.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
47. RPS11 ENSGALG00000017299 332.15 2673.51 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. RPS29 ENSGALG00000012229 328.44 2643.65 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. RPS28 ENSGALG00000024398 326.85 2630.85 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
50. MDK ENSGALG00000008367 325.79 2622.32 midkine [Source:NCBI gene;Acc:423196]
51. RPL29 ENSGALG00000026978 324.73 2613.79 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
52. TCEB3 ENSGALG00000034625 321.02 2583.92 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
53. RPL26 RPL26 314.67 2532.81
54. RPS2 ENSGALG00000005490 314.14 2528.55 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
55. RPS25 ENSGALG00000007699 313.08 2520.01 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
56. RPS15 ENSGALG00000015195 309.37 2490.15 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
57. ENSGALG00000028649 ENSGALG00000028649 301.95 2430.43
58. CIRBP ENSGALG00000030918 300.89 2421.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
59. HMGB2 ENSGALG00000010745 299.83 2413.36 high mobility group box 2 [Source:NCBI gene;Acc:396482]
60. PPIA ENSGALG00000028600 298.24 2400.57 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
61. RPL13 ENSGALG00000006179 292.42 2353.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
62. MT-ND3 MT-ND3 290.83 2340.92
63. RPL21 ENSGALG00000027035 287.65 2315.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. RPL38 ENSGALG00000001465 287.65 2315.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
65. RPL35 ENSGALG00000035677 283.41 2281.20 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
66. RPL12 ENSGALG00000008806 282.35 2272.67 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
67. RPS15A ENSGALG00000006771 282.35 2272.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. GNB2L1 ENSGALG00000000122 278.64 2242.80 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
69. RPL23 ENSGALG00000001634 271.23 2183.16 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. ANP32B ENSGALG00000037483 270.70 2178.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. RPS7 ENSGALG00000016392 269.11 2166.10 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
72. ATP5G3 267.52 2153.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
73. CRHOA CRHOA 266.99 2149.03
74. RPL18A 266.99 2149.03 ribosomal protein L18a
75. H3-IX H3-IX 266.46 2144.76
76. ALDOC ENSGALG00000026077 265.40 2136.23 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
77. RPS13 ENSGALG00000006096 262.75 2114.90 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. MT-ND1 MT-ND1 250.57 2016.86
79. RPL14 ENSGALG00000043379 250.04 2012.60 ribosomal protein L14
80. ENO1 ENSGALG00000002377 243.68 1961.41 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. HSPA8 ENSGALG00000006512 238.91 1923.01 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
82. EEF1B2 ENSGALG00000008590 237.85 1914.48 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
83. HMGN2 HMGN2 230.97 1859.10
84. SET ENSGALG00000004701 226.20 1820.71 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
85. HMGN5 ENSGALG00000007131 225.67 1816.44 high mobility group nucleosome binding domain 5, transcript variant X1
86. NME2 ENSGALG00000002932 224.08 1803.64 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
87. EEF1D 221.96 1786.58 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. RPL3 ENSGALG00000012172 220.37 1773.78 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. RPS27A ENSGALG00000036790 218.25 1756.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
90. PSMC6 ENSGALG00000012408 217.72 1752.45 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
91. UBB ENSGALG00000004509 217.19 1748.19 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. RPL24 ENSGALG00000015339 216.66 1743.92 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
93. ACTG1_1 ENSGALG00000001381 215.08 1731.20 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
94. STMN1 ENSGALG00000001475 207.66 1671.48 stathmin 1 [Source:NCBI gene;Acc:396057]
95. SLC25A6_1 ENSGALG00000016691 205.54 1654.41 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. RPL7 ENSGALG00000035252 203.42 1637.35 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
97. RPS20 ENSGALG00000014432 202.36 1628.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
98. RPS16 ENSGALG00000026490 199.18 1603.22 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
99. RPS3 ENSGALG00000017330 194.95 1569.17 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
100. ATP6V1G1 ENSGALG00000007190 192.83 1552.11 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA