Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s26.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 7373.85 59351.90
2. GAL10 GAL10 1867.84 15034.19
3. MT-ATP6 MT-ATP6 1472.05 11848.49
4. EEF1A EEF1A 1374.96 11067.01
5. RPS3A ENSGALG00000010077 1052.53 8471.78 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. ENSGALG00000018384 ENSGALG00000018384 926.89 7460.51
7. RPS23 ENSGALG00000015617 849.14 6834.70 ribosomal protein S23
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 803.89 6470.49 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 792.03 6375.03 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. GAPDH ENSGALG00000014442 761.72 6131.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND5 MT-ND5 740.64 5961.39
12. RPL8 ENSGALG00000016232 720.43 5798.72 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
13. RPLP1 ENSGALG00000030878 707.69 5696.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. MT-CO1 MT-CO1 667.27 5370.84
15. MT-CYB MT-CYB 653.22 5257.75
16. RPS8 ENSGALG00000010124 604.90 4868.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. gga-mir-3533 ENSGALG00000027736 566.24 4557.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. RPLP0 ENSGALG00000023294 565.80 4554.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
19. MT-ND4 MT-ND4 553.50 4455.11
20. RPL7A ENSGALG00000003197 520.99 4193.43 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
21. TMSB4X ENSGALG00000026383 500.79 4030.84 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. RPS6 ENSGALG00000015082 499.47 4020.22 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
23. RPL4 ENSGALG00000007711 494.64 3981.34 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
24. RPS4 RPS4 478.38 3850.47
25. RPL15 ENSGALG00000011290 457.74 3684.34 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RAN ENSGALG00000002569 456.86 3677.25 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
27. TXN ENSGALG00000015704 451.15 3631.29 thioredoxin [Source:NCBI gene;Acc:396437]
28. RPSA 442.36 3560.54 ribosomal protein SA
29. RPL6 ENSGALG00000004818 418.64 3369.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
30. ENSGALG00000002696 ENSGALG00000002696 400.63 3224.66
31. RPL5 ENSGALG00000005922 392.28 3157.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
32. RPL19 ENSGALG00000001658 391.40 3150.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPS12 ENSGALG00000013990 384.37 3093.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
34. PHB2 ENSGALG00000014567 383.06 3083.24 prohibitin 2 [Source:NCBI gene;Acc:771124]
35. RPL26 RPL26 381.30 3069.07
36. SNRPD1 ENSGALG00000041334 376.03 3026.65 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
37. RPL27A ENSGALG00000005948 375.15 3019.57 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPL36AL ENSGALG00000004952 368.56 2966.53 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
39. RPS14 ENSGALG00000004588 367.24 2955.90 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
40. RPL23A ENSGALG00000003966 366.36 2948.82 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
41. ANXA1 ENSGALG00000015148 365.49 2941.82 annexin A1 [Source:NCBI gene;Acc:404271]
42. RPLP2 ENSGALG00000034811 363.29 2924.11 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
43. RPS21 ENSGALG00000005338 350.55 2821.57 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
44. gga-mir-3527 gga-mir-3527 350.11 2818.03
45. RPL29 ENSGALG00000026978 340.89 2743.81 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
46. RPL27 ENSGALG00000002837 340.45 2740.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. RPL21 ENSGALG00000027035 336.05 2704.86 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
48. RPS11 ENSGALG00000017299 328.15 2641.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL13 ENSGALG00000006179 318.04 2559.89 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
50. RPS7 ENSGALG00000016392 317.60 2556.35 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. MDK ENSGALG00000008367 316.29 2545.81 midkine [Source:NCBI gene;Acc:423196]
52. RPL32 ENSGALG00000027142 315.85 2542.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. MT-ND3 MT-ND3 311.45 2506.85
54. HSPA8 ENSGALG00000006512 304.86 2453.81 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
55. RPL37 ENSGALG00000014833 301.35 2425.56 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. H3-IX H3-IX 298.71 2404.31
57. RPL23 ENSGALG00000001634 296.52 2386.68 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. ATP5G3 296.08 2383.14 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. RPS15 ENSGALG00000015195 295.64 2379.60 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
60. RPL14 ENSGALG00000043379 294.76 2372.51 ribosomal protein L14
61. CRHOA CRHOA 293.44 2361.89
62. RPS28 ENSGALG00000024398 293.00 2358.35 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
63. RPL38 ENSGALG00000001465 292.12 2351.27 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
64. CIRBP ENSGALG00000030918 291.69 2347.80 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
65. RPS29 ENSGALG00000012229 291.25 2344.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. ENSGALG00000018386 ENSGALG00000018386 289.93 2333.64
67. RPS15A ENSGALG00000006771 285.97 2301.76 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. RPL18A 281.58 2266.43 ribosomal protein L18a
69. RPS2 ENSGALG00000005490 280.70 2259.35 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
70. ANP32B ENSGALG00000037483 279.39 2248.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. RPS25 ENSGALG00000007699 279.39 2248.80 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. RPS3 ENSGALG00000017330 264.45 2128.55 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
73. HMGN5 ENSGALG00000007131 262.25 2110.84 high mobility group nucleosome binding domain 5, transcript variant X1
74. ENSGALG00000028649 ENSGALG00000028649 260.06 2093.22
75. RPL35 ENSGALG00000035677 259.62 2089.67 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
76. MT-ND1 MT-ND1 248.64 2001.30
77. RPL12 ENSGALG00000008806 239.85 1930.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
78. EEF1B2 ENSGALG00000008590 238.97 1923.46 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
79. RPS16 ENSGALG00000026490 238.09 1916.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
80. TCEB3 ENSGALG00000034625 235.46 1895.21 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
81. PPIA ENSGALG00000028600 231.50 1863.34 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
82. ENO1 ENSGALG00000002377 230.62 1856.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. HMGB2 ENSGALG00000010745 230.19 1852.79 high mobility group box 2 [Source:NCBI gene;Acc:396482]
84. STMN1 ENSGALG00000001475 230.19 1852.79 stathmin 1 [Source:NCBI gene;Acc:396057]
85. UBB ENSGALG00000004509 229.75 1849.25 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. RPL7 ENSGALG00000035252 226.67 1824.46 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. GNB2L1 ENSGALG00000000122 219.64 1767.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
88. NME2 ENSGALG00000002932 219.20 1764.33 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
89. PSMC6 ENSGALG00000012408 214.81 1729.00 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
90. EEF1D 214.37 1725.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. RPL3 ENSGALG00000012172 212.17 1707.75 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. ATP6V1G1 ENSGALG00000007190 211.30 1700.75 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
93. SET ENSGALG00000004701 205.59 1654.79 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. RPS13 ENSGALG00000006096 205.15 1651.25 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
95. HMGN2 HMGN2 199.44 1605.29
96. SLC25A6_1 ENSGALG00000016691 198.12 1594.66 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. ENSGALG00000028992 ENSGALG00000028992 195.92 1576.95
98. EIF4G2 ENSGALG00000005587 191.97 1545.16 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
99. RPL24 ENSGALG00000015339 189.77 1527.45 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
100. RPS24 ENSGALG00000004871 188.45 1516.83 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA