Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s24.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8545.56 68788.44
2. GAL10 GAL10 2201.26 17719.29
3. EEF1A EEF1A 1707.37 13743.66
4. MT-ATP6 MT-ATP6 1418.44 11417.89
5. ENSGALG00000018384 ENSGALG00000018384 1024.86 8249.72
6. RPS3A ENSGALG00000010077 1024.86 8249.72 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-CYB MT-CYB 836.24 6731.41
8. RPS10 ENSGALG00000002813 830.79 6687.54 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPLP1 ENSGALG00000030878 798.08 6424.23 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 796.99 6415.46 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. MT-CO1 MT-CO1 774.09 6231.12
12. RPS23 ENSGALG00000015617 685.78 5520.26 ribosomal protein S23
13. RPS8 ENSGALG00000010124 635.63 5116.57 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPL8 ENSGALG00000016232 630.18 5072.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. MT-ND5 MT-ND5 625.82 5037.61
16. MT-ND4 MT-ND4 599.65 4826.95
17. GAPDH ENSGALG00000014442 595.29 4791.85 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPL7A ENSGALG00000003197 538.59 4335.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. RPL29 ENSGALG00000026978 502.62 4045.90 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
20. RPS6 ENSGALG00000015082 494.98 3984.40 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. TXN ENSGALG00000015704 494.98 3984.40 thioredoxin [Source:NCBI gene;Acc:396437]
22. RPL19 ENSGALG00000001658 486.26 3914.20 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. ENSGALG00000002696 ENSGALG00000002696 440.47 3545.61
24. RPS12 ENSGALG00000013990 438.29 3528.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. gga-mir-3533 ENSGALG00000027736 426.30 3431.55 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
26. RPS4 RPS4 416.48 3352.50
27. RPL23A ENSGALG00000003966 411.03 3308.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. RPS21 ENSGALG00000005338 411.03 3308.63 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPL36AL ENSGALG00000004952 401.22 3229.67 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
30. RPL27 ENSGALG00000002837 391.41 3150.70 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPS14 ENSGALG00000004588 388.14 3124.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
32. RPLP0 ENSGALG00000023294 382.69 3080.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
33. RPL27A ENSGALG00000005948 371.78 2992.68 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RAN ENSGALG00000002569 368.51 2966.36 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
35. RPL26 RPL26 366.33 2948.81
36. RPL15 ENSGALG00000011290 364.15 2931.27 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. TMSB4X ENSGALG00000026383 364.15 2931.27 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. RPL32 ENSGALG00000027142 355.43 2861.07 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
39. RPL4 ENSGALG00000007711 355.43 2861.07 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
40. RPL5 ENSGALG00000005922 354.34 2852.30 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
41. RPS7 ENSGALG00000016392 353.25 2843.53 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
42. RPL6 ENSGALG00000004818 352.16 2834.75 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
43. PHB2 ENSGALG00000014567 346.71 2790.88 prohibitin 2 [Source:NCBI gene;Acc:771124]
44. RPL38 ENSGALG00000001465 346.71 2790.88 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPSA 346.71 2790.88 ribosomal protein SA
46. ENSGALG00000018386 ENSGALG00000018386 344.53 2773.33
47. RPL37 ENSGALG00000014833 341.26 2747.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
48. RPS28 ENSGALG00000024398 336.89 2711.83 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
49. HSPA8 ENSGALG00000006512 334.71 2694.29 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
50. RPS16 ENSGALG00000026490 332.53 2676.74 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPS15A ENSGALG00000006771 324.90 2615.32 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPL14 ENSGALG00000043379 322.72 2597.77 ribosomal protein L14
53. MT-ND3 MT-ND3 315.09 2536.35
54. RPS11 ENSGALG00000017299 314.00 2527.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. RPS29 ENSGALG00000012229 310.73 2501.26 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
56. MDK ENSGALG00000008367 307.46 2474.93 midkine [Source:NCBI gene;Acc:423196]
57. HMGN5 ENSGALG00000007131 306.37 2466.16 high mobility group nucleosome binding domain 5, transcript variant X1
58. CRHOA CRHOA 296.55 2387.11
59. RPL35 ENSGALG00000035677 296.55 2387.11 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
60. SNRPD1 ENSGALG00000041334 294.37 2369.56 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
61. RPLP2 ENSGALG00000034811 292.19 2352.02 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
62. RPL13 ENSGALG00000006179 286.74 2308.15 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
63. RPS25 ENSGALG00000007699 284.56 2290.60 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
64. gga-mir-3527 gga-mir-3527 283.47 2281.82
65. RPL21 ENSGALG00000027035 282.38 2273.05 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPS15 ENSGALG00000015195 281.29 2264.28 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
67. UBB ENSGALG00000004509 280.20 2255.50 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
68. RPL18A 279.11 2246.73 ribosomal protein L18a
69. TCEB3 ENSGALG00000034625 279.11 2246.73 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. H3-IX H3-IX 267.12 2150.21
71. RPL12 ENSGALG00000008806 257.30 2071.17 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
72. RPL23 ENSGALG00000001634 257.30 2071.17 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. CIRBP ENSGALG00000030918 248.58 2000.97 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
74. ATP5G3 245.31 1974.65 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. ENSGALG00000028649 ENSGALG00000028649 244.22 1965.88
76. RPS3 ENSGALG00000017330 239.86 1930.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. RPS2 ENSGALG00000005490 238.77 1922.01 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
78. PPIA ENSGALG00000028600 236.59 1904.46 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
79. BLMH ENSGALG00000004259 235.50 1895.68 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
80. ANXA1 ENSGALG00000015148 233.32 1878.14 annexin A1 [Source:NCBI gene;Acc:404271]
81. RPS13 ENSGALG00000006096 230.05 1851.81 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. MT-ND6 MT-ND6 228.96 1843.04
83. NME2 ENSGALG00000002932 227.87 1834.26 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
84. RPL24 ENSGALG00000015339 226.78 1825.49 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
85. SLC25A6_1 ENSGALG00000016691 223.51 1799.17 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
86. EEF1D 221.33 1781.62 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. STMN1 ENSGALG00000001475 220.24 1772.85 stathmin 1 [Source:NCBI gene;Acc:396057]
88. ENO1 ENSGALG00000002377 211.51 1702.57 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
89. HSP90B1 ENSGALG00000033789 211.51 1702.57 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
90. ENSGALG00000028992 ENSGALG00000028992 208.24 1676.25
91. EIF2S1 ENSGALG00000009565 206.06 1658.70 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
92. RPL7 ENSGALG00000035252 204.97 1649.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
93. SSR1 ENSGALG00000012798 203.88 1641.15 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
94. RPL3 ENSGALG00000012172 202.79 1632.38 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. MT-ND1 MT-ND1 200.61 1614.83
96. NUCKS1 ENSGALG00000000708 200.61 1614.83 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
97. HMGN2 HMGN2 199.52 1606.06
98. SET ENSGALG00000004701 197.34 1588.51 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. EIF4EBP1 ENSGALG00000003205 196.25 1579.74 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
100. RPS24 ENSGALG00000004871 196.25 1579.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA