Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s23.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6173.11 49688.35
2. EEF1A EEF1A 2092.17 16840.21
3. GAL10 GAL10 1536.68 12368.98
4. MT-ATP6 MT-ATP6 1306.36 10515.10
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1063.20 8557.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS3A ENSGALG00000010077 979.77 7886.33 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. RPS10 ENSGALG00000002813 889.92 7163.11 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPLP1 ENSGALG00000030878 730.19 5877.42 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
9. RPS23 ENSGALG00000015617 708.09 5699.53 ribosomal protein S23
10. MT-CO1 MT-CO1 685.98 5521.56
11. RPS8 ENSGALG00000010124 685.98 5521.56 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. MT-CYB MT-CYB 634.64 5108.32
13. ENSGALG00000018384 ENSGALG00000018384 614.67 4947.58
14. RPL8 ENSGALG00000016232 594.71 4786.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. RAN ENSGALG00000002569 567.61 4568.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
16. RPL7A ENSGALG00000003197 546.93 4402.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
17. TMSB4X ENSGALG00000026383 541.94 4362.16 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
18. MT-ND5 MT-ND5 539.80 4344.94
19. TXN ENSGALG00000015704 514.84 4144.03 thioredoxin [Source:NCBI gene;Acc:396437]
20. RPS4 RPS4 502.01 4040.76
21. GAPDH ENSGALG00000014442 497.02 4000.59 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
22. gga-mir-3533 ENSGALG00000027736 493.45 3971.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
23. RPLP0 ENSGALG00000023294 487.74 3925.90 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. RPL4 ENSGALG00000007711 470.63 3788.18 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
25. MT-ND4 MT-ND4 462.79 3725.07
26. RPS12 ENSGALG00000013990 446.39 3593.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPS6 ENSGALG00000015082 444.25 3575.84 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
28. RPL19 ENSGALG00000001658 430.70 3466.77 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL27A ENSGALG00000005948 426.42 3432.32 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. ENSGALG00000002696 ENSGALG00000002696 419.29 3374.93
31. MT-ND3 MT-ND3 419.29 3374.93
32. RPL23A ENSGALG00000003966 415.01 3340.48 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
33. RPL5 ENSGALG00000005922 405.74 3265.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
34. RPL26 RPL26 394.33 3174.03
35. RPS14 ENSGALG00000004588 390.05 3139.57 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
36. RPSA 373.65 3007.57 ribosomal protein SA
37. RPS15 ENSGALG00000015195 370.09 2978.91 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
38. RPL27 ENSGALG00000002837 369.37 2973.12 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPL21 ENSGALG00000027035 365.10 2938.75 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. RPS21 ENSGALG00000005338 360.10 2898.50 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL29 ENSGALG00000026978 355.11 2858.34 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPS28 ENSGALG00000024398 354.40 2852.62 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
43. RPL36AL ENSGALG00000004952 351.55 2829.68 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
44. RPL32 ENSGALG00000027142 346.56 2789.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. PHB2 ENSGALG00000014567 343.70 2766.50 prohibitin 2 [Source:NCBI gene;Acc:771124]
46. RPL13 ENSGALG00000006179 338.00 2720.62 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
47. RPL15 ENSGALG00000011290 335.15 2697.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
48. RPL6 ENSGALG00000004818 328.73 2646.00 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPL37 ENSGALG00000014833 326.59 2628.78 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. gga-mir-3527 gga-mir-3527 323.74 2605.83
51. RPL23 ENSGALG00000001634 313.04 2519.71 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
52. SNRPD1 ENSGALG00000041334 308.05 2479.54 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
53. HMGB2 ENSGALG00000010745 305.91 2462.32 high mobility group box 2 [Source:NCBI gene;Acc:396482]
54. ENSGALG00000028649 ENSGALG00000028649 298.78 2404.93
55. RPS7 ENSGALG00000016392 298.78 2404.93 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. CRHOA CRHOA 298.07 2399.21
57. MDK ENSGALG00000008367 293.07 2358.97 midkine [Source:NCBI gene;Acc:423196]
58. TCEB3 ENSGALG00000034625 290.22 2336.03 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. CIRBP ENSGALG00000030918 289.51 2330.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPL18A 289.51 2330.31 ribosomal protein L18a
61. RPS15A ENSGALG00000006771 286.66 2307.37 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. RPLP2 ENSGALG00000034811 284.52 2290.15 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
63. RPS29 ENSGALG00000012229 283.80 2284.35 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. RPS25 ENSGALG00000007699 283.09 2278.64 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
65. HSPA8 ENSGALG00000006512 275.25 2215.53 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
66. RPL14 ENSGALG00000043379 269.54 2169.57 ribosomal protein L14
67. RPL38 ENSGALG00000001465 260.99 2100.75 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. HMGN5 ENSGALG00000007131 260.27 2094.95 high mobility group nucleosome binding domain 5, transcript variant X1
69. UBB ENSGALG00000004509 259.56 2089.24 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
70. RPL7 ENSGALG00000035252 256.71 2066.30 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
71. RPL12 ENSGALG00000008806 255.28 2054.79 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
72. H3-IX H3-IX 253.14 2037.56
73. RPS2 ENSGALG00000005490 251.72 2026.13 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
74. SSR1 ENSGALG00000012798 246.72 1985.89 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
75. RPL35 ENSGALG00000035677 241.02 1940.01 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
76. RPS16 ENSGALG00000026490 240.31 1934.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
77. ANP32B ENSGALG00000037483 237.45 1911.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. SLC25A6_1 ENSGALG00000016691 236.74 1905.56 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
79. RPS13 ENSGALG00000006096 230.32 1853.88 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. ENSGALG00000018386 ENSGALG00000018386 228.90 1842.45
81. NUCKS1 ENSGALG00000000708 228.18 1836.66 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
82. NME2 ENSGALG00000002932 226.05 1819.51 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. STMN1 ENSGALG00000001475 221.77 1785.06 stathmin 1 [Source:NCBI gene;Acc:396057]
84. HMGN2 HMGN2 221.05 1779.27
85. MT-ND6 MT-ND6 221.05 1779.27
86. MT-ND1 MT-ND1 218.91 1762.04
87. RPS3 ENSGALG00000017330 218.20 1756.33 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
88. PPIA ENSGALG00000028600 216.06 1739.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
89. SET ENSGALG00000004701 212.50 1710.45 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
90. RPS24 ENSGALG00000004871 211.78 1704.65 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
91. RPS11 ENSGALG00000017299 208.22 1676.00 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
92. HSP90B1 ENSGALG00000033789 203.23 1635.83 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
93. HBZ ENSGALG00000023740 201.80 1624.32 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
94. DYL1 ENSGALG00000007153 200.37 1612.81 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
95. RPL3 ENSGALG00000012172 200.37 1612.81 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
96. GPX1 ENSGALG00000028204 198.95 1601.38 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
97. RPL24 ENSGALG00000015339 198.95 1601.38 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
98. ENO1 ENSGALG00000002377 198.24 1595.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
99. EEF1D 197.52 1589.87 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. RPL10A ENSGALG00000002644 197.52 1589.87 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA