Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s2.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4617.73 37167.72
2. EEF1A EEF1A 1350.52 10870.22
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1115.21 8976.23 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS3A ENSGALG00000010077 1053.89 8482.67 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. MT-ATP6 MT-ATP6 1000.41 8052.22
6. RPS10 ENSGALG00000002813 855.66 6887.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPLP1 ENSGALG00000030878 754.41 6072.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. RPL4 ENSGALG00000007711 675.97 5440.83 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. ENSGALG00000018384 ENSGALG00000018384 665.28 5354.78
10. gga-mir-3533 ENSGALG00000027736 661.00 5320.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 652.44 5251.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPS23 ENSGALG00000015617 646.03 5199.84 ribosomal protein S23
13. TMSB4X ENSGALG00000026383 628.20 5056.33 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
14. RPS8 ENSGALG00000010124 589.69 4746.37 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPLP0 ENSGALG00000023294 579.00 4660.32 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. RPL8 ENSGALG00000016232 561.89 4522.61 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL15 ENSGALG00000011290 537.64 4327.42 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. MT-CO1 MT-CO1 524.09 4218.36
19. RAN ENSGALG00000002569 506.27 4074.93 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
20. RPS4 RPS4 495.57 3988.80
21. RPL7A ENSGALG00000003197 478.46 3851.08 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. MT-ND4 MT-ND4 474.89 3822.35
23. MT-CYB MT-CYB 463.48 3730.51
24. TXN ENSGALG00000015704 457.78 3684.63 thioredoxin [Source:NCBI gene;Acc:396437]
25. MT-ND5 MT-ND5 453.50 3650.18
26. RPL27 ENSGALG00000002837 452.79 3644.47 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
27. RPL19 ENSGALG00000001658 451.36 3632.96 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. RPL23A ENSGALG00000003966 442.81 3564.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. SNRPD1 ENSGALG00000041334 433.54 3489.53 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPS28 ENSGALG00000024398 422.13 3397.69 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. ANP32B ENSGALG00000037483 416.42 3351.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
32. PHB2 ENSGALG00000014567 411.43 3311.57 prohibitin 2 [Source:NCBI gene;Acc:771124]
33. ENSGALG00000018386 ENSGALG00000018386 390.75 3145.11
34. RPL27A ENSGALG00000005948 385.76 3104.95 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. HMGB2 ENSGALG00000010745 377.20 3036.05 high mobility group box 2 [Source:NCBI gene;Acc:396482]
36. ENSGALG00000002696 ENSGALG00000002696 375.78 3024.62
37. RPL32 ENSGALG00000027142 374.35 3013.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. RPS21 ENSGALG00000005338 373.64 3007.40 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. CIRBP ENSGALG00000030918 370.07 2978.66 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
40. RPL6 ENSGALG00000004818 369.36 2972.95 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
41. RPSA 366.51 2950.01 ribosomal protein SA
42. RPL26 RPL26 364.37 2932.78
43. ENSGALG00000028649 ENSGALG00000028649 358.67 2886.90
44. RPS12 ENSGALG00000013990 352.25 2835.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. HMGN2 HMGN2 344.40 2772.05
46. ENO1 ENSGALG00000002377 340.84 2743.39 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
47. HSPA8 ENSGALG00000006512 340.13 2737.68 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
48. RPL13 ENSGALG00000006179 335.13 2697.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
49. RPS6 ENSGALG00000015082 334.42 2691.72 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
50. RPL29 ENSGALG00000026978 333.71 2686.00 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
51. RPS15 ENSGALG00000015195 329.43 2651.55 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
52. RPS29 ENSGALG00000012229 328.00 2640.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
53. MDK ENSGALG00000008367 327.29 2634.33 midkine [Source:NCBI gene;Acc:423196]
54. RPLP2 ENSGALG00000034811 315.88 2542.49 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
55. PPIA ENSGALG00000028600 315.17 2536.78 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
56. HMGN5 ENSGALG00000007131 313.74 2525.27 high mobility group nucleosome binding domain 5, transcript variant X1
57. RPS7 ENSGALG00000016392 312.32 2513.84 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. RPL5 ENSGALG00000005922 308.04 2479.39 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
59. RPS2 ENSGALG00000005490 300.20 2416.28 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
60. RPL21 ENSGALG00000027035 297.34 2393.26 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. RPL38 ENSGALG00000001465 288.07 2318.65 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
62. RPL36AL ENSGALG00000004952 285.93 2301.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
63. RPS13 ENSGALG00000006096 285.93 2301.43 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
64. RPL14 ENSGALG00000043379 285.22 2295.71 ribosomal protein L14
65. STMN1 ENSGALG00000001475 284.51 2290.00 stathmin 1 [Source:NCBI gene;Acc:396057]
66. gga-mir-3527 gga-mir-3527 283.08 2278.49
67. RPL37 ENSGALG00000014833 281.66 2267.06 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
68. UBB ENSGALG00000004509 274.53 2209.67 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
69. RPS15A ENSGALG00000006771 272.39 2192.44 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
70. RPL18A 270.96 2180.93 ribosomal protein L18a
71. RPL23 ENSGALG00000001634 270.25 2175.22 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
72. RPS16 ENSGALG00000026490 269.53 2169.42 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
73. TCEB3 ENSGALG00000034625 268.11 2158.00 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPL12 ENSGALG00000008806 263.83 2123.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
75. RPS11 ENSGALG00000017299 262.40 2112.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
76. PSMC6 ENSGALG00000012408 253.85 2043.22 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
77. RPS14 ENSGALG00000004588 250.99 2020.20 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS25 ENSGALG00000007699 250.28 2014.48 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. MARCKSL1 ENSGALG00000032335 247.43 1991.54 MARCKS like 1 [Source:NCBI gene;Acc:770764]
80. RPL35 ENSGALG00000035677 245.29 1974.32 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
81. ATP5G3 242.44 1951.38 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
82. NME2 ENSGALG00000002932 240.30 1934.15 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. BLMH ENSGALG00000004259 226.75 1825.09 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
84. EIF5A2 ENSGALG00000009309 226.75 1825.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. MT-ND3 MT-ND3 221.76 1784.93
86. SLC25A6_1 ENSGALG00000016691 219.62 1767.70 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
87. H2AFZ ENSGALG00000014023 218.19 1756.19 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
88. RPS3 ENSGALG00000017330 218.19 1756.19 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
89. GNB2L1 ENSGALG00000000122 212.49 1710.31 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
90. CRABP-I ENSGALG00000003193 208.92 1681.58 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
91. CRHOA CRHOA 206.79 1664.44
92. RPL24 ENSGALG00000015339 206.79 1664.44 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
93. RPL10A ENSGALG00000002644 200.37 1612.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
94. EIF4G2 ENSGALG00000005587 198.23 1595.54 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
95. RPS27A ENSGALG00000036790 198.23 1595.54 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
96. AKAP12 ENSGALG00000036240 196.09 1578.31 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
97. LDHB ENSGALG00000035836 195.38 1572.60 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
98. FKBP4 ENSGALG00000014331 193.24 1555.37 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
99. HNRNPDL ENSGALG00000023199 193.24 1555.37 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. RPS20 ENSGALG00000014432 192.52 1549.58 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA