Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s19.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6291.58 50642.13
2. EEF1A EEF1A 1903.17 15318.98
3. MT-ATP6 MT-ATP6 1505.30 12116.45
4. RPS3A ENSGALG00000010077 1138.26 9162.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. RPLP1 ENSGALG00000030878 950.53 7651.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 914.81 7363.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPS10 ENSGALG00000002813 843.36 6788.37 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS8 ENSGALG00000010124 717.98 5779.16 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
9. MT-CYB MT-CYB 713.07 5739.64
10. MT-ND5 MT-ND5 709.57 5711.46
11. MT-CO1 MT-CO1 678.05 5457.75
12. RPS23 ENSGALG00000015617 627.62 5051.83 ribosomal protein S23
13. MT-ND4 MT-ND4 592.59 4769.87
14. gga-mir-3533 ENSGALG00000027736 572.98 4612.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. RPL8 ENSGALG00000016232 567.38 4566.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. MDK ENSGALG00000008367 531.65 4279.35 midkine [Source:NCBI gene;Acc:423196]
17. RPL7A ENSGALG00000003197 518.34 4172.22 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. TMSB4X ENSGALG00000026383 488.22 3929.78 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
19. RPL29 ENSGALG00000026978 486.82 3918.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
20. ENSGALG00000002696 ENSGALG00000002696 477.72 3845.26
21. RPLP0 ENSGALG00000023294 473.51 3811.37 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
22. RPL27A ENSGALG00000005948 467.21 3760.66 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL19 ENSGALG00000001658 466.51 3755.03 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPL4 ENSGALG00000007711 465.81 3749.39 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
25. RPL15 ENSGALG00000011290 456.00 3670.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPS12 ENSGALG00000013990 454.60 3659.16 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPL23A ENSGALG00000003966 449.00 3614.09 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. RAN ENSGALG00000002569 432.89 3484.41 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
29. RPL27 ENSGALG00000002837 430.79 3467.51 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPS6 ENSGALG00000015082 424.48 3416.72 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
31. RPL26 RPL26 423.78 3411.09
32. TXN ENSGALG00000015704 419.58 3377.28 thioredoxin [Source:NCBI gene;Acc:396437]
33. RPS21 ENSGALG00000005338 418.88 3371.65 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPL37 ENSGALG00000014833 416.08 3349.11 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
35. RPL5 ENSGALG00000005922 412.57 3320.85 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
36. GAPDH ENSGALG00000014442 410.47 3303.95 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
37. RPS4 RPS4 409.77 3298.32
38. ENSGALG00000018384 ENSGALG00000018384 390.86 3146.11
39. RPL13 ENSGALG00000006179 378.95 3050.24 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
40. MT-ND3 MT-ND3 377.55 3038.97
41. HMGB2 ENSGALG00000010745 372.65 2999.53 high mobility group box 2 [Source:NCBI gene;Acc:396482]
42. RPS15A ENSGALG00000006771 371.95 2993.90 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPL6 ENSGALG00000004818 367.74 2960.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPLP2 ENSGALG00000034811 365.64 2943.11 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
45. gga-mir-3527 gga-mir-3527 357.94 2881.13
46. RPL36AL ENSGALG00000004952 357.24 2875.49 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
47. RPSA 351.63 2830.34 ribosomal protein SA
48. RPL21 ENSGALG00000027035 349.53 2813.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPS29 ENSGALG00000012229 337.62 2717.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
50. RPS25 ENSGALG00000007699 333.42 2683.76 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
51. RPS28 ENSGALG00000024398 332.02 2672.49 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
52. RPL32 ENSGALG00000027142 317.31 2554.09 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. RPS15 ENSGALG00000015195 317.31 2554.09 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
54. SNRPD1 ENSGALG00000041334 317.31 2554.09 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
55. RPL38 ENSGALG00000001465 314.51 2531.55 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
56. RPL23 ENSGALG00000001634 313.11 2520.28 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
57. RPL12 ENSGALG00000008806 306.80 2469.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
58. RPS14 ENSGALG00000004588 302.60 2435.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. RPS16 ENSGALG00000026490 302.60 2435.69 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. RPL14 ENSGALG00000043379 301.90 2430.05 ribosomal protein L14
61. RPS7 ENSGALG00000016392 299.80 2413.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. CIRBP ENSGALG00000030918 295.60 2379.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
63. RPL18A 294.90 2373.71 ribosomal protein L18a
64. PHB2 ENSGALG00000014567 292.79 2356.72 prohibitin 2 [Source:NCBI gene;Acc:771124]
65. TCEB3 ENSGALG00000034625 292.79 2356.72 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
66. RPL35 ENSGALG00000035677 276.68 2227.05 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
67. HMGN5 ENSGALG00000007131 267.58 2153.80 high mobility group nucleosome binding domain 5, transcript variant X1
68. AKAP12 ENSGALG00000036240 264.08 2125.63 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
69. ANP32B ENSGALG00000037483 264.08 2125.63 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. H3-IX H3-IX 261.27 2103.01
71. RPS11 ENSGALG00000017299 254.97 2052.30 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
72. RPS2 ENSGALG00000005490 250.77 2018.50 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
73. STMN1 ENSGALG00000001475 247.96 1995.88 stathmin 1 [Source:NCBI gene;Acc:396057]
74. MT-ND6 MT-ND6 244.46 1967.71
75. CRHOA CRHOA 238.86 1922.63
76. HMGN2 HMGN2 238.16 1917.00
77. MT-ND1 MT-ND1 230.45 1854.94
78. ENSGALG00000028992 ENSGALG00000028992 229.05 1843.67
79. RPL7 ENSGALG00000035252 228.35 1838.03 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
80. RPL10A ENSGALG00000002644 227.65 1832.40 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. HSP90B1 ENSGALG00000033789 223.45 1798.59 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
82. ENSGALG00000028649 ENSGALG00000028649 222.75 1792.96
83. PPIA ENSGALG00000028600 222.05 1787.32 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
84. RPS24 ENSGALG00000004871 220.65 1776.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. CNN3 ENSGALG00000005597 217.84 1753.44 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
86. HSPA8 ENSGALG00000006512 217.14 1747.80 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
87. RPS13 ENSGALG00000006096 214.34 1725.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
88. UBB ENSGALG00000004509 212.94 1713.99 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. SET ENSGALG00000004701 211.54 1702.73 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
90. RPS20 ENSGALG00000014432 208.04 1674.55 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
91. RPS3 ENSGALG00000017330 208.04 1674.55 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
92. PSMC6 ENSGALG00000012408 201.73 1623.76 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
93. RPL24 ENSGALG00000015339 196.13 1578.69 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
94. ENSGALG00000018386 ENSGALG00000018386 193.33 1556.15
95. SLC25A6_1 ENSGALG00000016691 193.33 1556.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. EEF1B2 ENSGALG00000008590 192.63 1550.52 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
97. RPL31 ENSGALG00000016775 192.63 1550.52 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. EIF4G2 ENSGALG00000005587 191.23 1539.25 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
99. EIF2S1 ENSGALG00000009565 189.83 1527.98 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
100. ENO1 ENSGALG00000002377 189.83 1527.98 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA