Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s16.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 8247.62 66381.31
2. MT-ATP6 MT-ATP6 1805.53 14531.88
3. EEF1A EEF1A 1690.70 13607.67
4. ENSGALG00000018384 ENSGALG00000018384 962.16 7743.98
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 912.66 7345.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS10 ENSGALG00000002813 882.97 7106.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. MT-ND5 MT-ND5 839.41 6756.03
8. RPS23 ENSGALG00000015617 791.90 6373.64 ribosomal protein S23
9. TMSB4X ENSGALG00000026383 716.67 5768.15 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
10. MT-CYB MT-CYB 708.75 5704.40
11. RPLP1 ENSGALG00000030878 647.38 5210.46 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. MT-ND4 MT-ND4 637.48 5130.78
13. RPLP0 ENSGALG00000023294 617.68 4971.42 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
14. MT-CO1 MT-CO1 597.88 4812.06
15. RPL8 ENSGALG00000016232 597.88 4812.06 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. RPS3A ENSGALG00000010077 574.13 4620.91 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
17. gga-mir-3533 ENSGALG00000027736 562.25 4525.29 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
18. ENSGALG00000018386 ENSGALG00000018386 554.33 4461.55
19. RPL7A ENSGALG00000003197 548.39 4413.74 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. RPL4 ENSGALG00000007711 536.51 4318.12 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. MDK ENSGALG00000008367 504.84 4063.23 midkine [Source:NCBI gene;Acc:423196]
22. RPS8 ENSGALG00000010124 490.98 3951.67 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPS6 ENSGALG00000015082 473.16 3808.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. GAPDH ENSGALG00000014442 465.24 3744.50 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
25. RPS4 RPS4 453.36 3648.89
26. RPSA 449.40 3617.01 ribosomal protein SA
27. RPL27 ENSGALG00000002837 443.46 3569.21 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
28. RPS12 ENSGALG00000013990 429.60 3457.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
29. RPL15 ENSGALG00000011290 423.67 3409.93 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
30. RPL23A ENSGALG00000003966 417.73 3362.12 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPL27A ENSGALG00000005948 395.95 3186.82 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL19 ENSGALG00000001658 393.97 3170.88 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL6 ENSGALG00000004818 388.03 3123.08 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
34. TXN ENSGALG00000015704 388.03 3123.08 thioredoxin [Source:NCBI gene;Acc:396437]
35. RPL29 ENSGALG00000026978 382.09 3075.27 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. gga-mir-3527 gga-mir-3527 368.23 2963.71
37. RPS28 ENSGALG00000024398 366.25 2947.78 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
38. SNRPD1 ENSGALG00000041334 350.41 2820.29 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. RAN ENSGALG00000002569 346.46 2788.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPS15A ENSGALG00000006771 340.52 2740.69 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPL26 RPL26 338.54 2724.75
42. RPLP2 ENSGALG00000034811 330.62 2661.01 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
43. MT-ND3 MT-ND3 328.64 2645.07
44. RPS29 ENSGALG00000012229 324.68 2613.20 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
45. RPL21 ENSGALG00000027035 320.72 2581.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. RPS21 ENSGALG00000005338 320.72 2581.33 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
47. ENSGALG00000002696 ENSGALG00000002696 316.76 2549.46
48. RPL32 ENSGALG00000027142 316.76 2549.46 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPL5 ENSGALG00000005922 316.76 2549.46 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
50. RPS15 ENSGALG00000015195 314.78 2533.52 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
51. RPL23 ENSGALG00000001634 312.80 2517.58 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
52. RPL36AL ENSGALG00000004952 310.82 2501.65 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
53. RPS14 ENSGALG00000004588 304.88 2453.84 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
54. PPIA ENSGALG00000028600 296.96 2390.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
55. RPS7 ENSGALG00000016392 296.96 2390.09 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. PHB2 ENSGALG00000014567 289.04 2326.35 prohibitin 2 [Source:NCBI gene;Acc:771124]
57. RPL12 ENSGALG00000008806 279.14 2246.67 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
58. RPL14 ENSGALG00000043379 279.14 2246.67 ribosomal protein L14
59. MT-ND6 MT-ND6 275.18 2214.80
60. RPL18A 273.20 2198.86 ribosomal protein L18a
61. RPL35 ENSGALG00000035677 273.20 2198.86 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
62. RPL38 ENSGALG00000001465 273.20 2198.86 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
63. BLMH ENSGALG00000004259 267.27 2151.13 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
64. RPS11 ENSGALG00000017299 267.27 2151.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. PSMC6 ENSGALG00000012408 265.29 2135.20 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
66. TCEB3 ENSGALG00000034625 265.29 2135.20 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPL37 ENSGALG00000014833 261.33 2103.33 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
68. CIRBP ENSGALG00000030918 259.35 2087.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. HMGN5 ENSGALG00000007131 255.39 2055.52 high mobility group nucleosome binding domain 5, transcript variant X1
70. RPS20 ENSGALG00000014432 253.41 2039.58 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
71. GNB2L1 ENSGALG00000000122 249.45 2007.71 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
72. ENSGALG00000028649 ENSGALG00000028649 241.53 1943.96
73. MBD3 ENSGALG00000001101 237.57 1912.09 methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
74. RPS25 ENSGALG00000007699 235.59 1896.16 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. LECT1 LECT1 233.61 1880.22
76. UBB ENSGALG00000004509 231.63 1864.28 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. EIF5A2 ENSGALG00000009309 229.65 1848.35 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
78. H3-IX H3-IX 227.67 1832.41
79. RPS3 ENSGALG00000017330 227.67 1832.41 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. EEF1B2 ENSGALG00000008590 225.69 1816.48 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
81. RPS16 ENSGALG00000026490 221.73 1784.60 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
82. NME2 ENSGALG00000002932 219.75 1768.67 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. RPL7 ENSGALG00000035252 219.75 1768.67 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
84. HMGB2 ENSGALG00000010745 217.77 1752.73 high mobility group box 2 [Source:NCBI gene;Acc:396482]
85. RPS2 ENSGALG00000005490 215.79 1736.79 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
86. ANP32B ENSGALG00000037483 213.81 1720.86 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
87. MT-ND1 MT-ND1 213.81 1720.86
88. STMN1 ENSGALG00000001475 213.81 1720.86 stathmin 1 [Source:NCBI gene;Acc:396057]
89. RPL13 ENSGALG00000006179 211.83 1704.92 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
90. GPC4 ENSGALG00000006080 209.85 1688.99 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
91. RPL10A ENSGALG00000002644 209.85 1688.99 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. SLC25A6_1 ENSGALG00000016691 209.85 1688.99 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. RPS13 ENSGALG00000006096 207.87 1673.05 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
94. AKAP12 ENSGALG00000036240 201.93 1625.24 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
95. ATP5G3 201.93 1625.24 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
96. RPL24 ENSGALG00000015339 201.93 1625.24 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
97. CNN3 ENSGALG00000005597 199.95 1609.31 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
98. HSPA8 ENSGALG00000006512 199.95 1609.31 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. RPL36 ENSGALG00000000474 199.95 1609.31 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
100. ENO1 ENSGALG00000002377 195.99 1577.43 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA