Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s11.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4490.49 36144.09
2. MT-ATP6 MT-ATP6 2577.06 20742.83
3. MT-CYB MT-CYB 1366.23 10996.83
4. MT-ND5 MT-ND5 1307.51 10524.19
5. TMSB4X ENSGALG00000026383 1257.40 10120.85 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
6. ENSGALG00000018384 ENSGALG00000018384 1235.63 9945.62
7. MT-CO1 MT-CO1 1008.35 8116.24
8. EEF1A EEF1A 969.37 7802.49
9. MT-ND4 MT-ND4 844.34 6796.12
10. RPS3A ENSGALG00000010077 814.98 6559.80 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
11. gga-mir-3533 ENSGALG00000027736 768.41 6184.96 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 637.30 5129.65 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPS10 ENSGALG00000002813 629.71 5068.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. ENSGALG00000018386 ENSGALG00000018386 610.98 4917.80
15. RPLP1 ENSGALG00000030878 581.62 4681.48 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. RPLP0 ENSGALG00000023294 560.36 4510.35 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
17. RPS23 ENSGALG00000015617 515.82 4151.85 ribosomal protein S23
18. RPL4 ENSGALG00000007711 496.58 3996.99 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
19. RPS8 ENSGALG00000010124 485.95 3911.43 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. gga-mir-3527 gga-mir-3527 484.43 3899.19
21. HMGB2 ENSGALG00000010745 467.22 3760.67 high mobility group box 2 [Source:NCBI gene;Acc:396482]
22. GAPDH ENSGALG00000014442 464.69 3740.30 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. RAN ENSGALG00000002569 463.68 3732.17 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
24. RPL8 ENSGALG00000016232 435.84 3508.09 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPS12 ENSGALG00000013990 430.27 3463.26 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPL15 ENSGALG00000011290 405.97 3267.66 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. MT-ND1 MT-ND1 400.91 3226.94
28. RPL23A ENSGALG00000003966 373.07 3002.85 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. RPS4 RPS4 373.07 3002.85
30. TXN ENSGALG00000015704 366.99 2953.91 thioredoxin [Source:NCBI gene;Acc:396437]
31. CIRBP ENSGALG00000030918 364.97 2937.65 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
32. RPL7A ENSGALG00000003197 364.46 2933.55 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. STMN1 ENSGALG00000001475 353.33 2843.96 stathmin 1 [Source:NCBI gene;Acc:396057]
34. RPL27 ENSGALG00000002837 343.20 2762.43 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL27A ENSGALG00000005948 342.19 2754.30 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. RPLP2 ENSGALG00000034811 334.09 2689.10 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
37. RPS28 ENSGALG00000024398 328.02 2640.24 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
38. PHB2 ENSGALG00000014567 313.84 2526.11 prohibitin 2 [Source:NCBI gene;Acc:771124]
39. RPSA 303.72 2444.65 ribosomal protein SA
40. RPL26 RPL26 301.69 2428.31
41. AKAP12 ENSGALG00000036240 300.68 2420.18 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
42. ENSGALG00000002696 ENSGALG00000002696 295.11 2375.35
43. RPS21 ENSGALG00000005338 294.61 2371.32 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
44. SNRPD1 ENSGALG00000041334 293.09 2359.09 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. UBB ENSGALG00000004509 290.05 2334.62 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
46. RPL13 ENSGALG00000006179 285.50 2298.00 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
47. MT-ND6 MT-ND6 283.47 2281.66
48. RPS15 ENSGALG00000015195 282.97 2277.63 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
49. RPL32 ENSGALG00000027142 282.46 2273.53 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS29 ENSGALG00000012229 275.37 2216.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
51. RPL5 ENSGALG00000005922 270.31 2175.73 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
52. RPL6 ENSGALG00000004818 269.30 2167.60 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
53. RPL19 ENSGALG00000001658 268.79 2163.50 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
54. RPS15A ENSGALG00000006771 268.29 2159.47 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. RPS6 ENSGALG00000015082 267.27 2151.26 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
56. RPL37 ENSGALG00000014833 265.25 2135.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
57. ANP32B ENSGALG00000037483 263.73 2122.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
58. RPL14 ENSGALG00000043379 262.21 2110.54 ribosomal protein L14
59. RPL29 ENSGALG00000026978 260.19 2094.28 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
60. HMGN5 ENSGALG00000007131 255.63 2057.57 high mobility group nucleosome binding domain 5, transcript variant X1
61. MARCKSL1 ENSGALG00000032335 255.63 2057.57 MARCKS like 1 [Source:NCBI gene;Acc:770764]
62. HSPA8 ENSGALG00000006512 253.10 2037.21 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
63. RPL36AL ENSGALG00000004952 252.59 2033.10 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. HMGN2 HMGN2 250.06 2012.74
65. PPIA ENSGALG00000028600 242.98 1955.75 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
66. RPS2 ENSGALG00000005490 239.94 1931.28 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
67. ENO1 ENSGALG00000002377 236.39 1902.71 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
68. RPL21 ENSGALG00000027035 233.36 1878.32 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. SET ENSGALG00000004701 232.85 1874.22 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
70. BLMH ENSGALG00000004259 230.32 1853.85 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
71. RPL23 ENSGALG00000001634 229.31 1845.72 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
72. RPS11 ENSGALG00000017299 226.78 1825.36 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
73. GDI2 ENSGALG00000008169 225.76 1817.15 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
74. MT-ND3 MT-ND3 220.70 1776.42
75. CRHOA CRHOA 218.17 1756.06
76. EIF4G2 ENSGALG00000005587 216.15 1739.80 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
77. RPS14 ENSGALG00000004588 215.64 1735.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
78. RPS13 ENSGALG00000006096 215.13 1731.59 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. RPS7 ENSGALG00000016392 213.11 1715.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. MDK ENSGALG00000008367 210.58 1694.96 midkine [Source:NCBI gene;Acc:423196]
81. RPL18A 210.58 1694.96 ribosomal protein L18a
82. RPS16 ENSGALG00000026490 210.58 1694.96 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
83. RPL12 ENSGALG00000008806 205.52 1654.24 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
84. PSMC6 ENSGALG00000012408 204.50 1646.03 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
85. ALDOC ENSGALG00000026077 202.48 1629.77 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPL38 ENSGALG00000001465 202.48 1629.77 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
87. TCEB3 ENSGALG00000034625 201.97 1625.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
88. HSP90B1 ENSGALG00000033789 199.95 1609.40 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
89. RPS25 ENSGALG00000007699 195.39 1572.70 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
90. HSP90AB1 ENSGALG00000010175 194.38 1564.57 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
91. ENSGALG00000028649 ENSGALG00000028649 193.87 1560.47
92. H3-IX H3-IX 193.37 1556.44
93. RPL35 ENSGALG00000035677 193.37 1556.44 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
94. C5ORF13 C5ORF13 191.34 1540.10
95. ELAVL4 ENSGALG00000010533 190.84 1536.08 ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:395634]
96. ATP5G3 184.76 1487.14 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. HSP90AA1 ENSGALG00000033212 183.24 1474.90 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
98. MYL12A ENSGALG00000014854 182.74 1470.88 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
99. ACTG1_1 ENSGALG00000001381 182.23 1466.77 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
100. SLC25A6_1 ENSGALG00000016691 178.18 1434.18 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA