Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s1.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4537.74 36526.18
2. MT-ATP6 MT-ATP6 2129.43 17140.68
3. EEF1A EEF1A 1300.62 10469.24
4. MT-CYB MT-CYB 878.70 7073.03
5. MT-ND5 MT-ND5 861.27 6932.72
6. RPS3A ENSGALG00000010077 791.55 6371.52 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. MT-ND4 MT-ND4 779.53 6274.76
8. gga-mir-3533 ENSGALG00000027736 745.27 5998.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-CO1 MT-CO1 742.87 5979.67
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 703.80 5665.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPLP1 ENSGALG00000030878 703.80 5665.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. GAPDH ENSGALG00000014442 694.79 5592.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPS10 ENSGALG00000002813 680.96 5481.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
14. RPLP0 ENSGALG00000023294 654.52 5268.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPL4 ENSGALG00000007711 620.86 4997.56 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. TMSB4X ENSGALG00000026383 610.64 4915.30 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
17. ENSGALG00000018384 ENSGALG00000018384 608.84 4900.81
18. RPS23 ENSGALG00000015617 589.61 4746.02 ribosomal protein S23
19. RPL8 ENSGALG00000016232 533.71 4296.06 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPS8 ENSGALG00000010124 522.89 4208.96 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. SNRPD1 ENSGALG00000041334 479.62 3860.66 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
22. HMGB2 ENSGALG00000010745 478.42 3851.00 high mobility group box 2 [Source:NCBI gene;Acc:396482]
23. RAN ENSGALG00000002569 473.61 3812.29 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
24. RPL15 ENSGALG00000011290 460.99 3710.70 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL23A ENSGALG00000003966 446.56 3594.55 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPS6 ENSGALG00000015082 439.95 3541.34 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
27. TXN ENSGALG00000015704 429.73 3459.08 thioredoxin [Source:NCBI gene;Acc:396437]
28. RPS4 RPS4 412.30 3318.78
29. gga-mir-3527 gga-mir-3527 395.47 3183.30
30. PHB2 ENSGALG00000014567 390.67 3144.67 prohibitin 2 [Source:NCBI gene;Acc:771124]
31. RPL27A ENSGALG00000005948 388.86 3130.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL27 ENSGALG00000002837 382.85 3081.72 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. HMGN2 HMGN2 379.25 3052.74
34. CIRBP ENSGALG00000030918 372.64 2999.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
35. RPL7A ENSGALG00000003197 370.23 2980.14 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. MT-ND1 MT-ND1 367.23 2955.99
37. ANP32B ENSGALG00000037483 366.02 2946.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
38. RPL19 ENSGALG00000001658 358.21 2883.38 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
39. RPS12 ENSGALG00000013990 356.41 2868.89 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. RPLP2 ENSGALG00000034811 351.60 2830.18 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
41. RPSA 335.37 2699.53 ribosomal protein SA
42. RPS21 ENSGALG00000005338 333.57 2685.05 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
43. RPS15 ENSGALG00000015195 332.37 2675.39 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
44. ENSGALG00000002696 ENSGALG00000002696 326.36 2627.01
45. RPS28 ENSGALG00000024398 326.36 2627.01 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
46. RPS2 ENSGALG00000005490 323.35 2602.78 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
47. ENSGALG00000018386 ENSGALG00000018386 313.74 2525.43
48. RPL26 RPL26 313.74 2525.43
49. RPL32 ENSGALG00000027142 311.33 2506.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPL29 ENSGALG00000026978 308.33 2481.88 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
51. RPL14 ENSGALG00000043379 307.12 2472.14 ribosomal protein L14
52. RPL18A 304.72 2452.82 ribosomal protein L18a
53. RPL13 ENSGALG00000006179 302.32 2433.50 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
54. HSPA8 ENSGALG00000006512 299.91 2414.10 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
55. RPL6 ENSGALG00000004818 295.10 2375.38 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. RPS29 ENSGALG00000012229 294.50 2370.55 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
57. RPL21 ENSGALG00000027035 289.09 2327.01 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL37 ENSGALG00000014833 289.09 2327.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. ENO1 ENSGALG00000002377 283.68 2283.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. RPS13 ENSGALG00000006096 283.08 2278.63 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
61. RPS11 ENSGALG00000017299 281.88 2268.97 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
62. RPS15A ENSGALG00000006771 272.87 2196.45 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
63. MDK ENSGALG00000008367 269.86 2172.22 midkine [Source:NCBI gene;Acc:423196]
64. RPL36AL ENSGALG00000004952 269.26 2167.39 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. RPL23 ENSGALG00000001634 265.05 2133.50 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. ENSGALG00000028649 ENSGALG00000028649 264.45 2128.67
67. PPIA ENSGALG00000028600 260.24 2094.78 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
68. STMN1 ENSGALG00000001475 259.64 2089.95 stathmin 1 [Source:NCBI gene;Acc:396057]
69. HMGN5 ENSGALG00000007131 259.04 2085.12 high mobility group nucleosome binding domain 5, transcript variant X1
70. RPL12 ENSGALG00000008806 257.24 2070.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. MT-ND3 MT-ND3 249.43 2007.77
72. RPL5 ENSGALG00000005922 248.22 1998.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
73. RPS16 ENSGALG00000026490 248.22 1998.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
74. GNB2L1 ENSGALG00000000122 247.62 1993.20 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
75. UBB ENSGALG00000004509 245.22 1973.88 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. RPS25 ENSGALG00000007699 242.21 1949.65 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
77. MARCKSL1 ENSGALG00000032335 240.41 1935.16 MARCKS like 1 [Source:NCBI gene;Acc:770764]
78. RPL38 ENSGALG00000001465 239.81 1930.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. NME2 ENSGALG00000002932 234.40 1886.78 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
80. ATP5G3 233.80 1881.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
81. ALDOC ENSGALG00000026077 233.20 1877.12 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
82. PSMC6 ENSGALG00000012408 233.20 1877.12 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
83. BLMH ENSGALG00000004259 231.39 1862.56 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
84. TCEB3 ENSGALG00000034625 227.79 1833.58 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
85. RPS7 ENSGALG00000016392 226.59 1823.92 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
86. EIF4G2 ENSGALG00000005587 225.99 1819.09 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
87. SET ENSGALG00000004701 222.98 1794.86 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
88. RPL35 ENSGALG00000035677 218.77 1760.97 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
89. AKAP12 ENSGALG00000036240 217.57 1751.31 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
90. RPS14 ENSGALG00000004588 216.97 1746.48 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
91. H3-IX H3-IX 210.96 1698.11
92. H2AFZ ENSGALG00000014023 204.35 1644.90 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
93. HNRNPDL ENSGALG00000023199 202.55 1630.41 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
94. SLC25A6_1 ENSGALG00000016691 192.93 1552.97 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. CCT4 ENSGALG00000008812 192.33 1548.14 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
96. EIF5A2 ENSGALG00000009309 192.33 1548.14 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
97. MT-ND6 MT-ND6 191.13 1538.49
98. SSR1 ENSGALG00000012798 191.13 1538.49 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
99. CRABP-I ENSGALG00000003193 189.92 1528.75 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
100. RPS27A ENSGALG00000036790 189.32 1523.92 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA