Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s7.

Sample reads: 152,042. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3772.06 24811.62
2. MT-ATP6 MT-ATP6 1867.99 12287.15
3. EEF1A EEF1A 1575.35 10362.24
4. RPLP1 ENSGALG00000030878 1437.81 9457.54 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. gga-mir-3527 gga-mir-3527 1269.06 8347.54
6. GAPDH ENSGALG00000014442 1197.85 7879.14 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. RPLP0 ENSGALG00000023294 1185.17 7795.74 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPS10 ENSGALG00000002813 1175.42 7731.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS23 ENSGALG00000015617 1155.91 7603.27 ribosomal protein S23
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 1153.96 7590.44 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. ENSGALG00000018384 ENSGALG00000018384 1130.55 7436.46
12. MT-CO1 MT-CO1 1094.45 7199.00
13. MT-CYB MT-CYB 1041.78 6852.55
14. RPL27A ENSGALG00000005948 959.84 6313.57 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. MT-ND5 MT-ND5 928.63 6108.28
16. gga-mir-3533 ENSGALG00000027736 893.51 5877.27 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
17. RPS29 ENSGALG00000012229 892.54 5870.89 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
18. RPS6 ENSGALG00000015082 878.88 5781.04 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
19. RPL27 ENSGALG00000002837 869.13 5716.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
20. RPL32 ENSGALG00000027142 866.20 5697.64 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
21. RPL8 ENSGALG00000016232 866.20 5697.64 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
22. RPS8 ENSGALG00000010124 859.37 5652.71 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPS3A ENSGALG00000010077 849.62 5588.58 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
24. RPS15 ENSGALG00000015195 837.91 5511.55 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
25. RPL4 ENSGALG00000007711 823.28 5415.32 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
26. RPSA 815.48 5364.01 ribosomal protein SA
27. RPS12 ENSGALG00000013990 811.57 5338.29 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
28. RPL19 ENSGALG00000001658 772.56 5081.70 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL26 RPL26 768.65 5055.98
30. RPL23A ENSGALG00000003966 755.97 4972.57 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPS28 ENSGALG00000024398 736.46 4844.24 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
32. RPL7A ENSGALG00000003197 695.50 4574.82 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. TMSB4X ENSGALG00000026383 688.67 4529.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPS4 RPS4 687.69 4523.44
35. RPS2 ENSGALG00000005490 652.58 4292.50 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. RPL18A 621.36 4087.14 ribosomal protein L18a
37. RPS14 ENSGALG00000004588 609.66 4010.18 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
38. ENSGALG00000018386 ENSGALG00000018386 607.70 3997.29
39. RPS11 ENSGALG00000017299 600.88 3952.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPS21 ENSGALG00000005338 588.20 3869.02 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL12 ENSGALG00000008806 577.47 3798.45 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPL29 ENSGALG00000026978 575.51 3785.55 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
43. PPIA ENSGALG00000028600 571.61 3759.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. MT-ND1 MT-ND1 569.66 3747.07
45. NME2 ENSGALG00000002932 553.08 3638.01 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
46. MT-ND3 MT-ND3 542.35 3567.44
47. RPS27A ENSGALG00000036790 542.35 3567.44 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPL5 ENSGALG00000005922 541.37 3560.99 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
49. RPS16 ENSGALG00000026490 539.42 3548.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. RPL36AL ENSGALG00000004952 532.60 3503.30 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
51. ENSGALG00000002696 ENSGALG00000002696 529.67 3484.03
52. RPL24 ENSGALG00000015339 524.79 3451.93 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
53. RPLP2 ENSGALG00000034811 522.84 3439.10 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
54. RPL38 ENSGALG00000001465 516.01 3394.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. RPL23 ENSGALG00000001634 506.26 3330.04 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
56. MT-ND4 MT-ND4 504.31 3317.22
57. RPL13 ENSGALG00000006179 503.33 3310.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
58. ENO1 ENSGALG00000002377 500.41 3291.57 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
59. RPL15 ENSGALG00000011290 496.50 3265.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
60. GNB2L1 ENSGALG00000000122 467.24 3073.38 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
61. RPL21 ENSGALG00000027035 461.39 3034.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL35 ENSGALG00000035677 459.44 3022.08 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
63. ENSGALG00000028992 ENSGALG00000028992 454.56 2989.98
64. RPS7 ENSGALG00000016392 452.61 2977.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. CRABP-I ENSGALG00000003193 450.66 2964.32 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
66. RPS25 ENSGALG00000007699 448.71 2951.50 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
67. RPL14 ENSGALG00000043379 445.78 2932.22 ribosomal protein L14
68. STMN1 ENSGALG00000001475 442.85 2912.95 stathmin 1 [Source:NCBI gene;Acc:396057]
69. UBB ENSGALG00000004509 441.88 2906.57 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
70. RPL36 ENSGALG00000000474 438.95 2887.30 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
71. RPL7 ENSGALG00000035252 438.95 2887.30 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
72. RPS13 ENSGALG00000006096 438.95 2887.30 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. RPS15A ENSGALG00000006771 433.10 2848.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
74. TCEB3 ENSGALG00000034625 427.25 2810.34 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. RPL6 ENSGALG00000004818 423.34 2784.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
76. MT-ND6 MT-ND6 418.47 2752.59
77. RPS20 ENSGALG00000014432 405.79 2669.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
78. RPL37 ENSGALG00000014833 397.01 2611.43 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
79. RPS17 ENSGALG00000002157 373.60 2457.44 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
80. FTH FTH 370.67 2438.17
81. SNRPD1 ENSGALG00000041334 357.99 2354.76 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
82. EEF1D 346.28 2277.74 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. HBZ ENSGALG00000023740 337.51 2220.05 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
84. RPL10A ENSGALG00000002644 336.53 2213.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. MARCKSL1 ENSGALG00000032335 328.73 2162.30 MARCKS like 1 [Source:NCBI gene;Acc:770764]
86. ATP5G3 327.75 2155.85 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. TXN ENSGALG00000015704 319.95 2104.55 thioredoxin [Source:NCBI gene;Acc:396437]
88. RPL3 ENSGALG00000012172 315.07 2072.45 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. ANP32B ENSGALG00000037483 311.17 2046.79 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
90. RPS24 ENSGALG00000004871 311.17 2046.79 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
91. HMGN2 HMGN2 302.39 1989.04
92. LDHB ENSGALG00000035836 288.73 1899.19 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. RPS3 ENSGALG00000017330 284.83 1873.54 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
94. HSPA8 ENSGALG00000006512 282.88 1860.71 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
95. RAN ENSGALG00000002569 275.08 1809.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
96. MDK ENSGALG00000008367 270.20 1777.30 midkine [Source:NCBI gene;Acc:423196]
97. PRDX1 ENSGALG00000010243 264.35 1738.82 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. DYL1 ENSGALG00000007153 263.37 1732.38 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. RPL31 ENSGALG00000016775 256.54 1687.45 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. RPL22 ENSGALG00000000719 254.59 1674.63 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA