Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s4.

Sample reads: 152,105. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2927.18 19245.55
2. EEF1A EEF1A 1678.49 11035.70
3. RPLP1 ENSGALG00000030878 1368.83 8999.75 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. RPS23 ENSGALG00000015617 1325.60 8715.52 ribosomal protein S23
5. RPLP0 ENSGALG00000023294 1216.52 7998.35 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS10 ENSGALG00000002813 1200.43 7892.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 1174.29 7720.69 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. GAPDH ENSGALG00000014442 1169.77 7690.98 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. ENSGALG00000018384 ENSGALG00000018384 1145.64 7532.33
10. RPS12 ENSGALG00000013990 1093.86 7191.88 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
11. RPS8 ENSGALG00000010124 1046.61 6881.23 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. MT-ATP6 MT-ATP6 1044.09 6864.66
13. RPS6 ENSGALG00000015082 1036.55 6815.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
14. RPL27A ENSGALG00000005948 1036.05 6811.80 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. RPL27 ENSGALG00000002837 976.73 6421.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
16. RPL19 ENSGALG00000001658 958.63 6302.78 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
17. RPL32 ENSGALG00000027142 930.48 6117.70 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
18. RPL26 RPL26 917.41 6031.77
19. MT-CO1 MT-CO1 891.27 5859.90
20. RPS29 ENSGALG00000012229 886.25 5826.90 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
21. RPS3A ENSGALG00000010077 885.24 5820.25 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
22. RPL23A ENSGALG00000003966 884.24 5813.68 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
23. ENSGALG00000018386 ENSGALG00000018386 882.73 5803.75
24. RPSA 876.70 5764.11 ribosomal protein SA
25. RPL7A ENSGALG00000003197 857.09 5635.18 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL8 ENSGALG00000016232 845.53 5559.17 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL4 ENSGALG00000007711 831.45 5466.60 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
28. RPS28 ENSGALG00000024398 806.82 5304.66 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
29. RPS4 RPS4 789.23 5189.01
30. gga-mir-3527 gga-mir-3527 785.21 5162.58
31. RPS11 ENSGALG00000017299 775.65 5099.73 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. RPS15 ENSGALG00000015195 773.64 5086.51 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
33. gga-mir-3533 ENSGALG00000027736 755.55 4967.57 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
34. TMSB4X ENSGALG00000026383 754.54 4960.93 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RPS2 ENSGALG00000005490 728.40 4789.07 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. RPS21 ENSGALG00000005338 708.29 4656.85 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPS14 ENSGALG00000004588 696.23 4577.56 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
38. RPS27A ENSGALG00000036790 671.60 4415.62 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
39. RPL29 ENSGALG00000026978 661.54 4349.48 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. PPIA ENSGALG00000028600 660.54 4342.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
41. RPS16 ENSGALG00000026490 657.02 4319.76 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPL36AL ENSGALG00000004952 625.35 4111.54 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
43. RPL38 ENSGALG00000001465 624.85 4108.25 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. ENSGALG00000002696 ENSGALG00000002696 618.31 4065.25
45. RPL12 ENSGALG00000008806 608.76 4002.46 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. NME2 ENSGALG00000002932 602.23 3959.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
47. RPL23 ENSGALG00000001634 592.17 3893.39 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
48. RPL13 ENSGALG00000006179 590.16 3880.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
49. MT-CYB MT-CYB 584.13 3840.52
50. GNB2L1 ENSGALG00000000122 583.12 3833.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPS15A ENSGALG00000006771 582.12 3827.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. RPL24 ENSGALG00000015339 579.10 3807.45 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
53. RPS7 ENSGALG00000016392 569.05 3741.38 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. RPL18A 556.48 3658.73 ribosomal protein L18a
55. RPL5 ENSGALG00000005922 555.98 3655.44 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. RPS20 ENSGALG00000014432 553.97 3642.23 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. RPL14 ENSGALG00000043379 548.44 3605.87 ribosomal protein L14
58. RPLP2 ENSGALG00000034811 548.44 3605.87 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
59. TCEB3 ENSGALG00000034625 537.38 3533.15 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. RPS25 ENSGALG00000007699 525.31 3453.80 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
61. RPL21 ENSGALG00000027035 523.30 3440.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. ENO1 ENSGALG00000002377 511.74 3364.58 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. RPL35 ENSGALG00000035677 510.74 3358.00 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
64. STMN1 ENSGALG00000001475 506.71 3331.50 stathmin 1 [Source:NCBI gene;Acc:396057]
65. RPS13 ENSGALG00000006096 505.71 3324.93 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. CRABP-I ENSGALG00000003193 494.15 3248.93 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
67. RPL7 ENSGALG00000035252 494.15 3248.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. ENSGALG00000028992 ENSGALG00000028992 472.03 3103.49
69. RPS17 ENSGALG00000002157 466.00 3063.85 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
70. RPL15 ENSGALG00000011290 449.91 2958.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
71. RPL6 ENSGALG00000004818 440.86 2898.56 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
72. RPL36 ENSGALG00000000474 439.35 2888.63 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
73. UBB ENSGALG00000004509 435.83 2865.48 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. MT-ND5 MT-ND5 432.82 2845.69
75. SNRPD1 ENSGALG00000041334 421.26 2769.69 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
76. MT-ND3 MT-ND3 408.69 2687.05
77. RPL37 ENSGALG00000014833 400.65 2634.18 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. HBZ ENSGALG00000023740 372.50 2449.10 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
79. LDHB ENSGALG00000035836 363.95 2392.89 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. RPL10A ENSGALG00000002644 354.90 2333.39 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. EEF1D 353.39 2323.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
82. MARCKSL1 ENSGALG00000032335 339.82 2234.24 MARCKS like 1 [Source:NCBI gene;Acc:770764]
83. ATP5G3 339.32 2230.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
84. MT-ND4 MT-ND4 339.32 2230.95
85. RAN ENSGALG00000002569 334.79 2201.17 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
86. RPL31 ENSGALG00000016775 332.28 2184.67 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. RPS3 ENSGALG00000017330 326.25 2145.02 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
88. ANP32B ENSGALG00000037483 324.24 2131.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. TXN ENSGALG00000015704 324.24 2131.81 thioredoxin [Source:NCBI gene;Acc:396437]
90. RPL22 ENSGALG00000000719 310.66 2042.52 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
91. RPL3 ENSGALG00000012172 310.66 2042.52 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. HSPA8 ENSGALG00000006512 309.66 2035.95 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
93. MDK ENSGALG00000008367 306.64 2016.09 midkine [Source:NCBI gene;Acc:423196]
94. FTH FTH 302.62 1989.66
95. MIF ENSGALG00000006326 296.09 1946.73 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
96. CHCHD2 ENSGALG00000002495 295.08 1940.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
97. MT-ND1 MT-ND1 292.06 1920.23
98. HMGN2 HMGN2 291.06 1913.65
99. MT-ND6 MT-ND6 284.52 1870.66
100. HBG1 HBG1 282.51 1857.44
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA