Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s35.

Sample reads: 152,369. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5989.21 39307.28
2. MT-ATP6 MT-ATP6 2716.51 17828.50
3. EEF1A EEF1A 1809.06 11872.89
4. ENSGALG00000018384 ENSGALG00000018384 1639.28 10758.62
5. gga-mir-3527 gga-mir-3527 1446.08 9490.65
6. RPLP1 ENSGALG00000030878 1440.22 9452.19 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. MT-CYB MT-CYB 1399.24 9183.23
8. RPS23 ENSGALG00000015617 1387.53 9106.38 ribosomal protein S23
9. MT-CO1 MT-CO1 1264.58 8299.46
10. RPS10 ENSGALG00000002813 1188.47 7799.95 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. GAPDH ENSGALG00000014442 1124.07 7377.29 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPLP0 ENSGALG00000023294 1094.80 7185.19 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. ENSGALG00000018386 ENSGALG00000018386 977.71 6416.73
14. RPS6 ENSGALG00000015082 907.46 5955.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
15. MT-ND5 MT-ND5 901.60 5917.21
16. MT-ND3 MT-ND3 819.64 5379.31
17. RPS8 ENSGALG00000010124 813.78 5340.85 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPS29 ENSGALG00000012229 802.07 5264.00 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
19. RPL7A ENSGALG00000003197 790.37 5187.21 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. RPS3A ENSGALG00000010077 784.51 5148.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
21. RPL27 ENSGALG00000002837 772.80 5071.90 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. RPL21 ENSGALG00000027035 761.09 4995.05 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
23. RPL32 ENSGALG00000027142 761.09 4995.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
24. RPS12 ENSGALG00000013990 755.24 4956.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. RPL27A ENSGALG00000005948 749.38 4918.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL35A ENSGALG00000007611, ENSGALG00000041230 737.67 4841.34 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
27. RPL8 ENSGALG00000016232 731.82 4802.95 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPL4 ENSGALG00000007711 725.96 4764.49 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
29. RPSA 720.11 4726.09 ribosomal protein SA
30. RPS15 ENSGALG00000015195 708.40 4649.24 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
31. RPL26 RPL26 702.55 4610.85
32. gga-mir-3533 ENSGALG00000027736 696.69 4572.39 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
33. RPS11 ENSGALG00000017299 644.00 4226.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. RPS14 ENSGALG00000004588 632.29 4149.73 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
35. RPL19 ENSGALG00000001658 626.44 4111.34 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPL13 ENSGALG00000006179 614.73 4034.48 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
37. RPL18A 597.16 3919.17 ribosomal protein L18a
38. RPL36AL ENSGALG00000004952 585.46 3842.38 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
39. RPL23 ENSGALG00000001634 579.60 3803.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
40. RPS21 ENSGALG00000005338 573.75 3765.53 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. MT-ND4 MT-ND4 567.89 3727.07
42. RPS2 ENSGALG00000005490 562.04 3688.68 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
43. RPS4 RPS4 562.04 3688.68
44. ENSGALG00000002696 ENSGALG00000002696 544.47 3573.36
45. RPL29 ENSGALG00000026978 538.62 3534.97 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
46. RPL5 ENSGALG00000005922 532.76 3496.51 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
47. RPL6 ENSGALG00000004818 526.91 3458.12 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
48. RPL23A ENSGALG00000003966 521.06 3419.72 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
49. RPS28 ENSGALG00000024398 521.06 3419.72 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
50. PPIA ENSGALG00000028600 515.20 3381.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
51. RPS15A ENSGALG00000006771 503.49 3304.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
52. MDK ENSGALG00000008367 497.64 3266.02 midkine [Source:NCBI gene;Acc:423196]
53. RPS20 ENSGALG00000014432 497.64 3266.02 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. EEF1D 491.78 3227.56 eukaryotic translation elongation factor 1 delta, transcript variant X13
55. RPL24 ENSGALG00000015339 485.93 3189.17 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
56. RPL35 ENSGALG00000035677 485.93 3189.17 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
57. GNB2L1 ENSGALG00000000122 480.07 3150.71 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
58. RPL12 ENSGALG00000008806 474.22 3112.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. RPS17 ENSGALG00000002157 474.22 3112.31 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
60. RPS27A ENSGALG00000036790 468.36 3073.85 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. FTH FTH 450.80 2958.61
62. MT-ND1 MT-ND1 439.09 2881.75
63. RPL38 ENSGALG00000001465 439.09 2881.75 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
64. MT-ND6 MT-ND6 433.24 2843.36
65. RPL37 ENSGALG00000014833 421.53 2766.51 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPL7 ENSGALG00000035252 421.53 2766.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
67. STMN1 ENSGALG00000001475 415.67 2728.05 stathmin 1 [Source:NCBI gene;Acc:396057]
68. RPS25 ENSGALG00000007699 403.96 2651.20 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. RPLP2 ENSGALG00000034811 398.11 2612.80 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
70. UBB ENSGALG00000004509 398.11 2612.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
71. RPS13 ENSGALG00000006096 392.26 2574.41 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
72. RPS7 ENSGALG00000016392 392.26 2574.41 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
73. RPS16 ENSGALG00000026490 374.69 2459.10 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
74. RPL36 ENSGALG00000000474 368.84 2420.70 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
75. RPS3 ENSGALG00000017330 368.84 2420.70 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. RPL10A ENSGALG00000002644 362.98 2382.24 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. RPL15 ENSGALG00000011290 362.98 2382.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
78. TCEB3 ENSGALG00000034625 362.98 2382.24 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
79. NUCKS1 ENSGALG00000000708 351.27 2305.39 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
80. RPL14 ENSGALG00000043379 351.27 2305.39 ribosomal protein L14
81. ENSGALG00000028992 ENSGALG00000028992 333.71 2190.14
82. HSPA8 ENSGALG00000006512 322.00 2113.29 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
83. TXN ENSGALG00000015704 322.00 2113.29 thioredoxin [Source:NCBI gene;Acc:396437]
84. ANP32B ENSGALG00000037483 316.15 2074.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. RPL3 ENSGALG00000012172 310.29 2036.44 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. TPT1 ENSGALG00000028872 310.29 2036.44 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
87. PRDX1 ENSGALG00000010243 304.44 1998.04 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. SNRPD1 ENSGALG00000041334 304.44 1998.04 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
89. CRHOA CRHOA 292.73 1921.19
90. RPL22 ENSGALG00000000719 292.73 1921.19 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
91. EEF2 ENSGALG00000033884 286.87 1882.73 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
92. NME2 ENSGALG00000002932 286.87 1882.73 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
93. PNRC1 ENSGALG00000015780 286.87 1882.73 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
94. DYL1 ENSGALG00000007153 281.02 1844.34 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
95. TMSB4X ENSGALG00000026383 281.02 1844.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
96. RPL31 ENSGALG00000016775 269.31 1767.49 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
97. ENO1 ENSGALG00000002377 263.46 1729.09 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
98. RPS24 ENSGALG00000004871 263.46 1729.09 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
99. H3-IX H3-IX 245.89 1613.78
100. HMGN2 HMGN2 240.04 1575.39
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA