Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s34.

Sample reads: 152,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4584.01 30114.58
2. MT-ATP6 MT-ATP6 2029.64 13333.69
3. EEF1A EEF1A 1673.21 10992.13
4. ENSGALG00000018384 ENSGALG00000018384 1554.41 10211.67
5. gga-mir-3527 gga-mir-3527 1445.50 9496.19
6. MT-CYB MT-CYB 1277.19 8390.48
7. RPLP1 ENSGALG00000030878 1267.29 8325.44 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. RPS10 ENSGALG00000002813 1069.27 7024.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. ENSGALG00000018386 ENSGALG00000018386 1049.47 6894.48
10. GAPDH ENSGALG00000014442 1039.57 6829.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-CO1 MT-CO1 1039.57 6829.44
12. RPL19 ENSGALG00000001658 999.97 6569.29 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
13. RPS6 ENSGALG00000015082 999.97 6569.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
14. RPLP0 ENSGALG00000023294 960.37 6309.13 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPS23 ENSGALG00000015617 930.66 6113.96 ribosomal protein S23
16. gga-mir-3533 ENSGALG00000027736 920.76 6048.92 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
17. RPSA 910.86 5983.88 ribosomal protein SA
18. MT-ND3 MT-ND3 841.56 5528.61
19. RPL32 ENSGALG00000027142 821.76 5398.54 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. RPS3A ENSGALG00000010077 792.05 5203.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
21. HBZ ENSGALG00000023740 782.15 5138.32 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
22. RPL27 ENSGALG00000002837 762.35 5008.25 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPL27A ENSGALG00000005948 762.35 5008.25 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPS14 ENSGALG00000004588 752.45 4943.21 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
25. RPS12 ENSGALG00000013990 742.55 4878.17 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPS15 ENSGALG00000015195 742.55 4878.17 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
27. RPS29 ENSGALG00000012229 732.65 4813.13 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. RPS8 ENSGALG00000010124 732.65 4813.13 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
29. MT-ND5 MT-ND5 722.75 4748.09
30. RPS28 ENSGALG00000024398 722.75 4748.09 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPS4 RPS4 722.75 4748.09
32. RPL4 ENSGALG00000007711 693.05 4552.98 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
33. RPL7A ENSGALG00000003197 663.35 4357.87 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL35A ENSGALG00000007611, ENSGALG00000041230 643.54 4227.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
35. RPS21 ENSGALG00000005338 613.84 4032.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. HBE 603.94 3967.57 hemoglobin subunit epsilon
37. MDK ENSGALG00000008367 603.94 3967.57 midkine [Source:NCBI gene;Acc:423196]
38. FTH FTH 594.04 3902.54
39. RPL26 RPL26 584.14 3837.50
40. RPL12 ENSGALG00000008806 574.24 3772.46 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL23A ENSGALG00000003966 574.24 3772.46 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
42. RPL36AL ENSGALG00000004952 574.24 3772.46 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
43. RPL5 ENSGALG00000005922 574.24 3772.46 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
44. RPL6 ENSGALG00000004818 574.24 3772.46 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. PPIA ENSGALG00000028600 554.44 3642.38 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
46. RPLP2 ENSGALG00000034811 554.44 3642.38 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
47. MT-ND1 MT-ND1 534.64 3512.31
48. RPL8 ENSGALG00000016232 534.64 3512.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
49. HBG1 HBG1 524.74 3447.27
50. RPL35 ENSGALG00000035677 524.74 3447.27 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
51. RPL23 ENSGALG00000001634 504.93 3317.13 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
52. RPS11 ENSGALG00000017299 504.93 3317.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPS13 ENSGALG00000006096 495.03 3252.09 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
54. RPS2 ENSGALG00000005490 495.03 3252.09 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
55. RPL13 ENSGALG00000006179 485.13 3187.05 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
56. MT-ND4 MT-ND4 475.23 3122.02
57. RPL29 ENSGALG00000026978 475.23 3122.02 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
58. RPS27A ENSGALG00000036790 475.23 3122.02 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. EEF1D 465.33 3056.98 eukaryotic translation elongation factor 1 delta, transcript variant X13
60. MT-ND6 MT-ND6 465.33 3056.98
61. RPL15 ENSGALG00000011290 465.33 3056.98 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
62. RPL7 ENSGALG00000035252 465.33 3056.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. RPS15A ENSGALG00000006771 465.33 3056.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. RPS16 ENSGALG00000026490 465.33 3056.98 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
65. GNB2L1 ENSGALG00000000122 425.73 2796.83 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
66. RPS17 ENSGALG00000002157 425.73 2796.83 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
67. RPS20 ENSGALG00000014432 425.73 2796.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. UBB ENSGALG00000004509 425.73 2796.83 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
69. ENO1 ENSGALG00000002377 415.83 2731.79 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPL18A 415.83 2731.79 ribosomal protein L18a
71. RPL21 ENSGALG00000027035 415.83 2731.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPL37 ENSGALG00000014833 415.83 2731.79 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPL38 ENSGALG00000001465 415.83 2731.79 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
74. ENSGALG00000002696 ENSGALG00000002696 396.03 2601.71
75. RPL14 ENSGALG00000043379 396.03 2601.71 ribosomal protein L14
76. TCEB3 ENSGALG00000034625 386.13 2536.67 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. NME2 ENSGALG00000002932 376.23 2471.64 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
78. RPL10A ENSGALG00000002644 356.42 2341.50 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. NUCKS1 ENSGALG00000000708 336.62 2211.42 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
80. RPS7 ENSGALG00000016392 336.62 2211.42 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. TMSB4X ENSGALG00000026383 336.62 2211.42 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
82. CALM CALM 326.72 2146.38
83. ENSGALG00000028992 ENSGALG00000028992 326.72 2146.38
84. RPS24 ENSGALG00000004871 326.72 2146.38 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. EEF2 ENSGALG00000033884 316.82 2081.34 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
86. RPL24 ENSGALG00000015339 316.82 2081.34 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
87. RPS25 ENSGALG00000007699 316.82 2081.34 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
88. ANP32B ENSGALG00000037483 306.92 2016.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. H3-IX H3-IX 306.92 2016.31
90. CRHOA CRHOA 297.02 1951.27
91. RPL22 ENSGALG00000000719 297.02 1951.27 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
92. SLC25A6_1 ENSGALG00000016691 297.02 1951.27 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. RPL3 ENSGALG00000012172 287.12 1886.23 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. RPS3 ENSGALG00000017330 287.12 1886.23 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
95. STMN1 ENSGALG00000001475 287.12 1886.23 stathmin 1 [Source:NCBI gene;Acc:396057]
96. PNRC1 ENSGALG00000015780 277.22 1821.19 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
97. PRDX1 ENSGALG00000010243 277.22 1821.19 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. ENSGALG00000022570 ENSGALG00000022570 257.42 1691.12
99. ATP5G3 237.62 1561.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. HMGN2 HMGN2 237.62 1561.04
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA