Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s20.

Sample reads: 152,096. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3795.40 24955.80
2. EEF1A EEF1A 1753.79 11531.65
3. RPLP1 ENSGALG00000030878 1682.80 11064.87 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. RPS23 ENSGALG00000015617 1487.08 9777.96 ribosomal protein S23
5. MT-ATP6 MT-ATP6 1400.73 9210.18
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 1389.22 9134.50 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPS10 ENSGALG00000002813 1279.85 8415.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS6 ENSGALG00000015082 1183.90 7784.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
9. RPLP0 ENSGALG00000023294 1176.23 7734.03 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPL32 ENSGALG00000027142 1157.04 7607.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
11. RPS3A ENSGALG00000010077 1110.99 7305.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
12. RPS8 ENSGALG00000010124 1107.15 7279.81 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. GAPDH ENSGALG00000014442 1072.61 7052.70 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL19 ENSGALG00000001658 1055.34 6939.15 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
15. RPS12 ENSGALG00000013990 963.24 6333.57 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
16. gga-mir-3527 gga-mir-3527 917.19 6030.78
17. RPL26 RPL26 915.27 6018.15
18. RPL8 ENSGALG00000016232 911.43 5992.90 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL7A ENSGALG00000003197 909.52 5980.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. RPL4 ENSGALG00000007711 898.00 5904.60 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. ENSGALG00000018384 ENSGALG00000018384 876.90 5765.86
22. gga-mir-3533 ENSGALG00000027736 874.98 5753.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
23. RPS15 ENSGALG00000015195 869.22 5715.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL27A ENSGALG00000005948 863.46 5677.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPSA 846.19 5563.93 ribosomal protein SA
26. RPS4 RPS4 825.09 5425.19
27. RPS2 ENSGALG00000005490 805.90 5299.01 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPS29 ENSGALG00000012229 803.98 5286.39 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPL27 ENSGALG00000002837 792.47 5210.71 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RPL23A ENSGALG00000003966 784.79 5160.21 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPS21 ENSGALG00000005338 761.77 5008.85 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPL21 ENSGALG00000027035 748.34 4920.54 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
33. MT-CO1 MT-CO1 742.58 4882.67
34. RPS14 ENSGALG00000004588 727.23 4781.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
35. PPIA ENSGALG00000028600 723.39 4756.49 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
36. RPL29 ENSGALG00000026978 719.55 4731.24 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
37. MT-CYB MT-CYB 698.45 4592.50
38. RPS28 ENSGALG00000024398 698.45 4592.50 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
39. RPL38 ENSGALG00000001465 694.61 4567.25 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
40. RPS15A ENSGALG00000006771 694.61 4567.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPL13 ENSGALG00000006179 692.69 4554.63 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
42. RPL36AL ENSGALG00000004952 671.58 4415.82 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
43. RPL12 ENSGALG00000008806 650.48 4277.08 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. TMSB4X ENSGALG00000026383 650.48 4277.08 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. ENSGALG00000018386 ENSGALG00000018386 646.64 4251.84
46. RPS11 ENSGALG00000017299 646.64 4251.84 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. RPS27A ENSGALG00000036790 644.72 4239.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. ENSGALG00000002696 ENSGALG00000002696 631.29 4150.90
49. GNB2L1 ENSGALG00000000122 631.29 4150.90 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPL23 ENSGALG00000001634 631.29 4150.90 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. RPL5 ENSGALG00000005922 619.78 4075.22 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
52. RPS20 ENSGALG00000014432 612.10 4024.73 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
53. MT-ND3 MT-ND3 606.34 3986.85
54. RPS16 ENSGALG00000026490 606.34 3986.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPL18A 598.67 3936.42 ribosomal protein L18a
56. RPS7 ENSGALG00000016392 598.67 3936.42 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. NME2 ENSGALG00000002932 596.75 3923.79 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL35 ENSGALG00000035677 587.16 3860.74 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
59. RPL24 ENSGALG00000015339 583.32 3835.49 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
60. RPL6 ENSGALG00000004818 575.64 3784.99 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. MT-ND5 MT-ND5 571.81 3759.81
62. MDK ENSGALG00000008367 550.70 3621.00 midkine [Source:NCBI gene;Acc:423196]
63. RPLP2 ENSGALG00000034811 539.19 3545.32 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
64. RPL14 ENSGALG00000043379 535.35 3520.07 ribosomal protein L14
65. EEF1D 523.83 3444.33 eukaryotic translation elongation factor 1 delta, transcript variant X13
66. TCEB3 ENSGALG00000034625 520.00 3419.14 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPL7 ENSGALG00000035252 506.57 3330.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. RPS13 ENSGALG00000006096 506.57 3330.84 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPL15 ENSGALG00000011290 504.65 3318.21 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
70. ENSGALG00000028992 ENSGALG00000028992 502.73 3305.59
71. SNRPD1 ENSGALG00000041334 479.70 3154.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
72. RPS25 ENSGALG00000007699 477.78 3141.53 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. RPL36 ENSGALG00000000474 449.00 2952.30 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. RPS17 ENSGALG00000002157 449.00 2952.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. RPS3 ENSGALG00000017330 441.33 2901.87 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. RPL37 ENSGALG00000014833 431.73 2838.74 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
77. UBB ENSGALG00000004509 431.73 2838.74 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. RPL10A ENSGALG00000002644 397.19 2611.63 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. RPL3 ENSGALG00000012172 374.17 2460.27 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
80. STMN1 ENSGALG00000001475 368.41 2422.40 stathmin 1 [Source:NCBI gene;Acc:396057]
81. ENO1 ENSGALG00000002377 362.65 2384.52 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. FTH FTH 356.90 2346.72
83. RPS24 ENSGALG00000004871 356.90 2346.72 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
84. RPL31 ENSGALG00000016775 347.30 2283.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
85. ATP5G3 345.39 2271.03 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. TXN ENSGALG00000015704 341.55 2245.78 thioredoxin [Source:NCBI gene;Acc:396437]
87. MT-ND1 MT-ND1 339.63 2233.16
88. MT-ND6 MT-ND6 339.63 2233.16
89. EEF1B2 ENSGALG00000008590 316.60 2081.73 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
90. ANP32B ENSGALG00000037483 308.93 2031.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. MIF ENSGALG00000006326 303.17 1993.43 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
92. DYL1 ENSGALG00000007153 301.25 1980.80 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
93. RPL22 ENSGALG00000000719 299.33 1968.18 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
94. MT-ND4 MT-ND4 297.42 1955.62
95. SLC25A6_1 ENSGALG00000016691 295.50 1942.99 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. TPT1 ENSGALG00000028872 293.58 1930.37 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
97. PRDX1 ENSGALG00000010243 291.66 1917.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. CRHOA CRHOA 280.15 1842.06
99. HMGN2 HMGN2 272.47 1791.56
100. NUCKS1 ENSGALG00000000708 270.55 1778.94 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA