Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s16.

Sample reads: 152,093. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3141.46 20655.68
2. EEF1A EEF1A 1741.68 11451.87
3. RPLP0 ENSGALG00000023294 1538.54 10116.18 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPLP1 ENSGALG00000030878 1526.33 10035.90 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. MT-ATP6 MT-ATP6 1387.57 9123.53
6. RPS23 ENSGALG00000015617 1348.72 8868.08 ribosomal protein S23
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 1320.97 8685.62 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. GAPDH ENSGALG00000014442 1184.43 7787.85 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPS10 ENSGALG00000002813 1171.11 7700.26 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. ENSGALG00000018384 ENSGALG00000018384 1160.01 7627.28
11. RPS6 ENSGALG00000015082 1050.11 6904.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
12. RPS12 ENSGALG00000013990 997.94 6561.64 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
13. RPS29 ENSGALG00000012229 969.08 6371.88 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
14. RPL27 ENSGALG00000002837 962.42 6328.09 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
15. RPSA 944.66 6211.31 ribosomal protein SA
16. gga-mir-3527 gga-mir-3527 940.22 6182.12
17. RPS8 ENSGALG00000010124 933.56 6138.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL27A ENSGALG00000005948 895.82 5890.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. gga-mir-3533 ENSGALG00000027736 886.94 5831.79 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
20. RPS28 ENSGALG00000024398 882.50 5802.60 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
21. RPL32 ENSGALG00000027142 872.51 5736.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
22. RPL19 ENSGALG00000001658 869.18 5715.02 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL4 ENSGALG00000007711 826.99 5437.61 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
24. RPL8 ENSGALG00000016232 822.55 5408.42 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPL26 RPL26 814.78 5357.33
26. RPS15 ENSGALG00000015195 789.25 5189.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
27. MT-CO1 MT-CO1 781.48 5138.38
28. RPS21 ENSGALG00000005338 773.71 5087.29 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPS11 ENSGALG00000017299 738.19 4853.74 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
30. RPS4 RPS4 732.64 4817.24
31. RPL23A ENSGALG00000003966 729.31 4795.35 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
32. RPL29 ENSGALG00000026978 713.77 4693.17 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPL7A ENSGALG00000003197 704.89 4634.78 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS2 ENSGALG00000005490 701.56 4612.89 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
35. PPIA ENSGALG00000028600 699.34 4598.29 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
36. RPL12 ENSGALG00000008806 692.68 4554.50 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
37. ENSGALG00000018386 ENSGALG00000018386 688.24 4525.30
38. RPS3A ENSGALG00000010077 688.24 4525.30 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPS14 ENSGALG00000004588 669.36 4401.17 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
40. RPS27A ENSGALG00000036790 656.04 4313.58 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. MT-CYB MT-CYB 630.51 4145.72
42. MT-ND5 MT-ND5 620.52 4080.03
43. RPS16 ENSGALG00000026490 600.54 3948.66 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPL23 ENSGALG00000001634 593.88 3904.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
45. RPL38 ENSGALG00000001465 589.44 3875.68 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. GNB2L1 ENSGALG00000000122 561.69 3693.22 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPL5 ENSGALG00000005922 560.58 3685.92 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
48. RPS15A ENSGALG00000006771 559.47 3678.62 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. RPLP2 ENSGALG00000034811 555.03 3649.42 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
50. RPL21 ENSGALG00000027035 553.92 3642.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPL18A 548.37 3605.63 ribosomal protein L18a
52. RPL35 ENSGALG00000035677 547.26 3598.34 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. MDK ENSGALG00000008367 543.93 3576.44 midkine [Source:NCBI gene;Acc:423196]
54. ENSGALG00000002696 ENSGALG00000002696 537.27 3532.65
55. NME2 ENSGALG00000002932 532.83 3503.46 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. TMSB4X ENSGALG00000026383 531.72 3496.16 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
57. RPS7 ENSGALG00000016392 529.50 3481.56 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. RPL24 ENSGALG00000015339 523.95 3445.07 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
59. RPL36AL ENSGALG00000004952 521.73 3430.47 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
60. RPS20 ENSGALG00000014432 516.18 3393.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. RPS25 ENSGALG00000007699 500.64 3291.80 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
62. RPL14 ENSGALG00000043379 491.76 3233.41 ribosomal protein L14
63. RPL6 ENSGALG00000004818 491.76 3233.41 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
64. MT-ND3 MT-ND3 489.54 3218.82
65. RPS13 ENSGALG00000006096 481.77 3167.73 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. RPL13 ENSGALG00000006179 479.54 3153.06 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
67. RPL36 ENSGALG00000000474 461.78 3036.29 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. MT-ND6 MT-ND6 457.34 3007.09
69. RPS17 ENSGALG00000002157 446.24 2934.11 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
70. ENSGALG00000028992 ENSGALG00000028992 445.13 2926.81
71. RPL7 ENSGALG00000035252 440.69 2897.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
72. RPL15 ENSGALG00000011290 432.92 2846.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
73. TCEB3 ENSGALG00000034625 418.49 2751.65 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. SNRPD1 ENSGALG00000041334 417.38 2744.35 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
75. EEF1D 414.05 2722.46 eukaryotic translation elongation factor 1 delta, transcript variant X13
76. RPL3 ENSGALG00000012172 398.51 2620.28 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
77. RPL10A ENSGALG00000002644 390.74 2569.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. ENO1 ENSGALG00000002377 371.87 2445.11 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
79. RPS3 ENSGALG00000017330 367.43 2415.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. STMN1 ENSGALG00000001475 365.21 2401.32 stathmin 1 [Source:NCBI gene;Acc:396057]
81. RPL37 ENSGALG00000014833 361.88 2379.43 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
82. MT-ND1 MT-ND1 349.67 2299.14
83. UBB ENSGALG00000004509 348.56 2291.85 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
84. FTH FTH 344.12 2262.65
85. RPS24 ENSGALG00000004871 341.90 2248.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
86. ATP5G3 340.79 2240.76 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
87. TXN ENSGALG00000015704 328.58 2160.47 thioredoxin [Source:NCBI gene;Acc:396437]
88. MT-ND4 MT-ND4 319.70 2102.09
89. RPL22 ENSGALG00000000719 318.59 2094.79 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
90. ANP32B ENSGALG00000037483 304.16 1999.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
91. EEF1B2 ENSGALG00000008590 303.05 1992.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
92. HMGN2 HMGN2 299.72 1970.71
93. PRDX1 ENSGALG00000010243 284.17 1868.47 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
94. RAN ENSGALG00000002569 284.17 1868.47 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. MARCKSL1 ENSGALG00000032335 270.85 1780.89 MARCKS like 1 [Source:NCBI gene;Acc:770764]
96. MIF ENSGALG00000006326 260.86 1715.20 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
97. NUCKS1 ENSGALG00000000708 259.75 1707.90 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
98. SLC25A6_1 ENSGALG00000016691 258.64 1700.61 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. HSPA8 ENSGALG00000006512 254.20 1671.41 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. TPT1 ENSGALG00000028872 251.98 1656.81 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA