Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s1.

Sample reads: 152,347. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3183.81 20899.69
2. EEF1A EEF1A 1718.10 11278.23
3. MT-ATP6 MT-ATP6 1550.99 10181.26
4. RPS23 ENSGALG00000015617 1482.31 9730.42 ribosomal protein S23
5. RPLP1 ENSGALG00000030878 1393.60 9148.10 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. GAPDH ENSGALG00000014442 1220.19 8009.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. RPLP0 ENSGALG00000023294 1219.61 8005.96 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1150.93 7555.12 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 1130.33 7419.90 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. gga-mir-3527 gga-mir-3527 1051.35 6901.44
11. RPL27A ENSGALG00000005948 1035.33 6796.28 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
12. RPS15 ENSGALG00000015195 936.89 6150.09 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. gga-mir-3533 ENSGALG00000027736 932.88 6123.76 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPS3A ENSGALG00000010077 919.72 6037.38 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
15. RPL27 ENSGALG00000002837 912.28 5988.54 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
16. RPS12 ENSGALG00000013990 912.28 5988.54 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL32 ENSGALG00000027142 898.54 5898.34 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
18. MT-CYB MT-CYB 889.38 5838.21
19. RPL23A ENSGALG00000003966 886.52 5819.44 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS6 ENSGALG00000015082 872.79 5729.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
21. RPS8 ENSGALG00000010124 843.03 5533.96 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL19 ENSGALG00000001658 841.31 5522.66 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL4 ENSGALG00000007711 825.28 5417.44 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
24. MT-CO1 MT-CO1 814.41 5346.08
25. MT-ND5 MT-ND5 798.96 5244.66
26. RPL8 ENSGALG00000016232 794.95 5218.34 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL26 RPL26 783.51 5143.24
28. RPL13 ENSGALG00000006179 780.64 5124.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
29. RPS29 ENSGALG00000012229 765.76 5026.73 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
30. RPSA 762.90 5007.95 ribosomal protein SA
31. RPS2 ENSGALG00000005490 760.04 4989.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. RPL7A ENSGALG00000003197 720.55 4729.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPS4 RPS4 678.77 4455.69
34. RPL36AL ENSGALG00000004952 675.91 4436.92 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
35. RPL18A 674.76 4429.37 ribosomal protein L18a
36. RPL29 ENSGALG00000026978 663.89 4358.02 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
37. RPS28 ENSGALG00000024398 661.60 4342.98 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
38. RPS21 ENSGALG00000005338 650.73 4271.63 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPL35 ENSGALG00000035677 644.43 4230.27 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
40. RPS11 ENSGALG00000017299 631.27 4143.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPS15A ENSGALG00000006771 619.25 4064.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPS16 ENSGALG00000026490 616.96 4049.95 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL23 ENSGALG00000001634 614.67 4034.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
44. RPS14 ENSGALG00000004588 602.08 3952.27 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. MT-ND1 MT-ND1 593.50 3895.95
46. RPS27A ENSGALG00000036790 578.62 3798.27 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. ENSGALG00000002696 ENSGALG00000002696 577.47 3790.72
48. NME2 ENSGALG00000002932 568.31 3730.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
49. RPL15 ENSGALG00000011290 567.17 3723.11 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
50. MT-ND3 MT-ND3 565.45 3711.82
51. RPL24 ENSGALG00000015339 562.02 3689.30 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
52. RPL5 ENSGALG00000005922 561.45 3685.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
53. TMSB4X ENSGALG00000026383 561.45 3685.56 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
54. RPS13 ENSGALG00000006096 554.01 3636.72 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
55. ENO1 ENSGALG00000002377 541.99 3557.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
56. RPL38 ENSGALG00000001465 537.98 3531.50 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
57. RPL14 ENSGALG00000043379 536.26 3520.21 ribosomal protein L14
58. RPL21 ENSGALG00000027035 529.97 3478.92 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL12 ENSGALG00000008806 527.11 3460.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
60. MT-ND4 MT-ND4 520.24 3415.04
61. PPIA ENSGALG00000028600 513.37 3369.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. RPLP2 ENSGALG00000034811 507.65 3332.40 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
63. RPL7 ENSGALG00000035252 499.63 3279.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
64. SNRPD1 ENSGALG00000041334 492.19 3230.91 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
65. RPS7 ENSGALG00000016392 484.75 3182.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. RPS25 ENSGALG00000007699 481.89 3163.30 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
67. ENSGALG00000018384 ENSGALG00000018384 474.45 3114.46
68. RPS20 ENSGALG00000014432 470.45 3088.20 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. GNB2L1 ENSGALG00000000122 454.99 2986.72 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
70. RPL6 ENSGALG00000004818 448.70 2945.43 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. ENSGALG00000028992 ENSGALG00000028992 446.98 2934.14
72. RPL36 ENSGALG00000000474 446.98 2934.14 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
73. TCEB3 ENSGALG00000034625 438.40 2877.82 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPS17 ENSGALG00000002157 420.65 2761.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. RPL37 ENSGALG00000014833 407.49 2674.91 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. CRABP-I ENSGALG00000003193 395.47 2596.01 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
77. RPL10A ENSGALG00000002644 391.47 2569.75 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. HMGN2 HMGN2 376.59 2472.07
79. STMN1 ENSGALG00000001475 370.29 2430.72 stathmin 1 [Source:NCBI gene;Acc:396057]
80. ANP32B ENSGALG00000037483 369.15 2423.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. UBB ENSGALG00000004509 362.85 2381.88 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. RPL31 ENSGALG00000016775 362.28 2378.14 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
83. ENSGALG00000018386 ENSGALG00000018386 357.70 2348.07
84. ATP5G3 341.10 2239.10 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
85. RAN ENSGALG00000002569 341.10 2239.10 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
86. EEF1D 334.81 2197.81 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. LDHB ENSGALG00000035836 325.65 2137.69 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. PRDX1 ENSGALG00000010243 321.64 2111.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. TXN ENSGALG00000015704 308.48 2024.97 thioredoxin [Source:NCBI gene;Acc:396437]
90. HSPA8 ENSGALG00000006512 301.61 1979.88 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. EIF5A2 ENSGALG00000009309 300.47 1972.39 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. MARCKSL1 ENSGALG00000032335 298.75 1961.10 MARCKS like 1 [Source:NCBI gene;Acc:770764]
93. RPL3 ENSGALG00000012172 287.88 1889.75 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. MIF ENSGALG00000006326 282.73 1855.94 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. MDK ENSGALG00000008367 281.58 1848.39 midkine [Source:NCBI gene;Acc:423196]
96. RPS3 ENSGALG00000017330 273.57 1795.81 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
97. SLC25A6_1 ENSGALG00000016691 273.57 1795.81 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. DYL1 ENSGALG00000007153 271.28 1780.78 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. MT-ND6 MT-ND6 268.99 1765.75
100. RPL22 ENSGALG00000000719 267.85 1758.26 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA