Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s8.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4317.26 34753.83
2. MT-ATP6 MT-ATP6 3625.94 29188.73
3. MT-ND5 MT-ND5 3116.59 25088.47
4. MT-CYB MT-CYB 2161.56 17400.50
5. MT-CO1 MT-CO1 2086.61 16797.16
6. EEF1A EEF1A 2009.84 16179.16
7. gga-mir-3527 gga-mir-3527 1899.21 15288.59
8. MT-ND4 MT-ND4 1791.29 14419.84
9. gga-mir-3533 ENSGALG00000027736 1455.34 11715.45 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1428.25 11497.38
11. GAPDH ENSGALG00000014442 1060.24 8534.91 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 966.77 7782.47
13. NME2 ENSGALG00000002932 915.74 7371.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 889.55 7160.86 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 645.26 5194.33 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 604.17 4863.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPS3 ENSGALG00000017330 563.53 4536.40 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. MDK ENSGALG00000008367 534.18 4300.14 midkine [Source:NCBI gene;Acc:423196]
19. RPL26 RPL26 501.67 4038.43
20. RPL7A ENSGALG00000003197 477.74 3845.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
21. CIRBP ENSGALG00000030918 464.64 3740.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. EIF4G2 ENSGALG00000005587 462.39 3722.23 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPS7 ENSGALG00000016392 448.84 3613.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPL7 ENSGALG00000035252 447.03 3598.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
25. RPL27A ENSGALG00000005948 443.87 3573.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. MT-ND2 MT-ND2 438.91 3533.21
27. RPL15 ENSGALG00000011290 414.52 3336.88 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
28. RPS23 ENSGALG00000015617 397.36 3198.74 ribosomal protein S23
29. RPL23 ENSGALG00000001634 394.65 3176.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
30. RPS4 RPS4 384.72 3096.99
31. RAN ENSGALG00000002569 380.20 3060.60 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. ENSGALG00000018384 ENSGALG00000018384 372.08 2995.23
33. RPS20 ENSGALG00000014432 362.59 2918.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
34. ENO1 ENSGALG00000002377 361.24 2907.97 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. RPL18A 354.01 2849.77 ribosomal protein L18a
36. RPS10 ENSGALG00000002813 348.60 2806.22 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. STMN1 ENSGALG00000001475 336.86 2711.71 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPL31 ENSGALG00000016775 334.15 2689.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPS6 ENSGALG00000015082 332.79 2678.95 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
40. RPS27A ENSGALG00000036790 331.89 2671.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPS16 ENSGALG00000026490 329.18 2649.89 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. ATP6V0C ENSGALG00000009229 314.28 2529.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. H3-IX H3-IX 305.70 2460.88
44. RPL21 ENSGALG00000027035 305.70 2460.88 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. TMSB4X ENSGALG00000026383 303.89 2446.31 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
46. RPS12 ENSGALG00000013990 300.28 2417.25 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. HMGN5 ENSGALG00000007131 292.60 2355.42 high mobility group nucleosome binding domain 5, transcript variant X1
48. RPS11 ENSGALG00000017299 291.25 2344.56 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPL32 ENSGALG00000027142 288.54 2322.74 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. FKBP4 ENSGALG00000014331 287.18 2311.79 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. SLC25A6_1 ENSGALG00000016691 283.12 2279.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
52. H2AFZ ENSGALG00000014023 281.31 2264.54 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
53. SNRPG ENSGALG00000028409 280.86 2260.92 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. RPL35A ENSGALG00000007611, ENSGALG00000041230 277.70 2235.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
55. EEF1B2 ENSGALG00000008590 276.35 2224.61 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
56. LDHB ENSGALG00000035836 274.99 2213.66 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
57. ATP5G3 269.12 2166.41 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. RPS24 ENSGALG00000004871 262.80 2115.53 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
59. EIF1 ENSGALG00000028517 258.74 2082.85 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
60. RPL27 ENSGALG00000002837 258.29 2079.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
61. CDK1 ENSGALG00000003085 247.90 1995.59 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
62. ENSGALG00000018386 ENSGALG00000018386 247.90 1995.59
63. CRHOA CRHOA 246.55 1984.72
64. ENSGALG00000028992 ENSGALG00000028992 246.55 1984.72
65. RPS29 ENSGALG00000012229 244.29 1966.53 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
66. RPS15A ENSGALG00000006771 242.03 1948.34 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
67. ANP32B ENSGALG00000037483 240.68 1937.47 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. CNN3 ENSGALG00000005597 237.06 1908.33 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
69. ERH ENSGALG00000017384 236.16 1901.08 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
70. RPL14 ENSGALG00000043379 230.74 1857.45 ribosomal protein L14
71. RPSA 230.74 1857.45 ribosomal protein SA
72. RPL36 ENSGALG00000000474 226.68 1824.77 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
73. RPS14 ENSGALG00000004588 225.32 1813.82 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. RPL10A ENSGALG00000002644 222.61 1792.00 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPL13 ENSGALG00000006179 218.55 1759.32 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
76. EIF5A2 ENSGALG00000009309 217.19 1748.37 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. ENSGALG00000002696 ENSGALG00000002696 215.84 1737.51
78. RPL4 ENSGALG00000007711 215.84 1737.51 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
79. BTF3L4 ENSGALG00000010570 214.03 1722.94 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
80. NDUFB9 ENSGALG00000042242 214.03 1722.94 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
81. RPLP1 ENSGALG00000030878 212.23 1708.45 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
82. HMGN2 HMGN2 210.42 1693.88
83. RPL38 ENSGALG00000001465 209.52 1686.63 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. RPL23A ENSGALG00000003966 209.07 1683.01 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
85. MIF ENSGALG00000006326 204.10 1643.00 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
86. MEIS2 ENSGALG00000039118 201.84 1624.81 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
87. HMGB1 ENSGALG00000042875 200.49 1613.94 high mobility group box 1 [Source:NCBI gene;Acc:395724]
88. RPL6 ENSGALG00000004818 200.04 1610.32 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. RPL3 ENSGALG00000012172 197.33 1588.50 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
90. SNRPE ENSGALG00000000137 196.88 1584.88 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
91. HMGB2 ENSGALG00000010745 196.42 1581.18 high mobility group box 2 [Source:NCBI gene;Acc:396482]
92. NONO ENSGALG00000005507 195.07 1570.31 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
93. RPS15 ENSGALG00000015195 195.07 1570.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
94. RPL29 ENSGALG00000026978 191.91 1544.87 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
95. HNRNPDL ENSGALG00000023199 191.01 1537.63 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. IGF2BP3 ENSGALG00000010961 185.59 1493.99 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
97. TPT1 ENSGALG00000028872 182.88 1472.18 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
98. PRDX1 ENSGALG00000010243 181.52 1461.23 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. EIF4EBP1 ENSGALG00000003205 181.07 1457.61 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
100. HNRNPA3 ENSGALG00000009250 179.72 1446.74 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA