Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s7.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4663.73 37545.06
2. MT-ATP6 MT-ATP6 3720.65 29952.86
3. MT-ND5 MT-ND5 3097.76 24938.32
4. MT-CYB MT-CYB 2099.35 16900.68
5. MT-CO1 MT-CO1 1968.35 15846.08
6. gga-mir-3527 gga-mir-3527 1897.15 15272.89
7. EEF1A EEF1A 1836.12 14781.57
8. gga-mir-3533 ENSGALG00000027736 1795.43 14453.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 1488.67 11984.44
10. MT-ND1 MT-ND1 1317.79 10608.78
11. GAPDH ENSGALG00000014442 1089.95 8774.57 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1071.24 8623.95 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 896.29 7215.53
14. NME2 ENSGALG00000002932 835.27 6724.29 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 718.50 5784.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 556.17 4477.41 midkine [Source:NCBI gene;Acc:423196]
17. RPL8 ENSGALG00000016232 509.38 4100.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. EIF4G2 ENSGALG00000005587 501.24 4035.20 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL26 RPL26 481.71 3877.98
20. RPS3 ENSGALG00000017330 472.35 3802.62 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL18A 471.13 3792.80 ribosomal protein L18a
22. CIRBP ENSGALG00000030918 457.71 3684.77 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPL7 ENSGALG00000035252 428.82 3452.19 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. RPS7 ENSGALG00000016392 414.17 3334.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL27A ENSGALG00000005948 409.29 3294.96 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL15 ENSGALG00000011290 396.68 3193.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL7A ENSGALG00000003197 396.68 3193.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. ENO1 ENSGALG00000002377 374.30 3013.28 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. RAN ENSGALG00000002569 372.27 2996.94 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. STMN1 ENSGALG00000001475 371.05 2987.11 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL31 ENSGALG00000016775 364.54 2934.71 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
32. RPS4 RPS4 358.03 2882.30
33. RPS23 ENSGALG00000015617 347.45 2797.12 ribosomal protein S23
34. ATP6V0C ENSGALG00000009229 345.82 2784.00 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. TMSB4X ENSGALG00000026383 335.65 2702.13 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
36. RPS27A ENSGALG00000036790 334.02 2689.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPL23 ENSGALG00000001634 333.21 2682.49 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
38. RPS16 ENSGALG00000026490 322.63 2597.31 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
39. RPS20 ENSGALG00000014432 320.19 2577.67 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPS6 ENSGALG00000015082 316.12 2544.90 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPS10 ENSGALG00000002813 312.05 2512.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. H3-IX H3-IX 307.58 2476.15
43. RPS11 ENSGALG00000017299 299.85 2413.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. HMGN5 ENSGALG00000007131 295.78 2381.16 high mobility group nucleosome binding domain 5, transcript variant X1
45. EIF1 ENSGALG00000028517 292.12 2351.69 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
46. LDHB ENSGALG00000035836 292.12 2351.69 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
47. SLC25A6_1 ENSGALG00000016691 289.27 2328.75 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. MT-ND2 MT-ND2 286.42 2305.81
49. ATP5G3 286.02 2302.59 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. FKBP4 ENSGALG00000014331 285.61 2299.29 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
51. ENSGALG00000018384 ENSGALG00000018384 282.76 2276.34
52. CRHOA CRHOA 280.73 2260.00
53. EEF1B2 ENSGALG00000008590 276.66 2227.23 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPS24 ENSGALG00000004871 265.67 2138.76 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
55. ANP32B ENSGALG00000037483 265.27 2135.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. H2AFZ ENSGALG00000014023 264.05 2125.72 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
57. RPL21 ENSGALG00000027035 262.01 2109.29 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPS29 ENSGALG00000012229 258.76 2083.13 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. MEIS2 ENSGALG00000039118 253.06 2037.24 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
60. RPL32 ENSGALG00000027142 253.06 2037.24 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
61. RPL23A ENSGALG00000003966 251.03 2020.90 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. RPL27 ENSGALG00000002837 242.08 1948.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
63. EIF4EBP1 ENSGALG00000003205 233.13 1876.80 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
64. RPS12 ENSGALG00000013990 233.13 1876.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
65. SNRPG ENSGALG00000028409 232.31 1870.20 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 231.09 1860.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. CDK1 ENSGALG00000003085 229.46 1847.25 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
68. RPL14 ENSGALG00000043379 229.46 1847.25 ribosomal protein L14
69. RPL36 ENSGALG00000000474 227.84 1834.21 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPLP1 ENSGALG00000030878 225.80 1817.79 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
71. RPSA 219.70 1768.68 ribosomal protein SA
72. HMGB2 ENSGALG00000010745 215.22 1732.61 high mobility group box 2 [Source:NCBI gene;Acc:396482]
73. ENSGALG00000028992 ENSGALG00000028992 214.82 1729.39
74. HMGB1 ENSGALG00000042875 214.00 1722.79 high mobility group box 1 [Source:NCBI gene;Acc:395724]
75. RPS14 ENSGALG00000004588 214.00 1722.79 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. HMGN2 HMGN2 207.09 1667.16
77. EIF3F ENSGALG00000005326 206.27 1660.56 eukaryotic translation initiation factor 3 subunit F
78. HNRNPDL ENSGALG00000023199 205.46 1654.04 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
79. MIF ENSGALG00000006326 205.46 1654.04 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
80. RPS15 ENSGALG00000015195 205.46 1654.04 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
81. ENSGALG00000002696 ENSGALG00000002696 205.05 1650.74
82. RPL38 ENSGALG00000001465 203.43 1637.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
83. ERH ENSGALG00000017384 203.02 1634.40 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
84. RPL29 ENSGALG00000026978 202.20 1627.80 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
85. EIF5A2 ENSGALG00000009309 201.80 1624.58 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
86. BTF3L4 ENSGALG00000010570 201.39 1621.28 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
87. RPS15A ENSGALG00000006771 201.39 1621.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
88. SNRPE ENSGALG00000000137 198.95 1601.63 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
89. ENSGALG00000018386 ENSGALG00000018386 198.14 1595.11
90. CNN3 ENSGALG00000005597 193.25 1555.75 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
91. NONO ENSGALG00000005507 192.85 1552.53 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
92. RPL10A ENSGALG00000002644 192.85 1552.53 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. ALDH1A2 ENSGALG00000004270 192.44 1549.23 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
94. HNRNPA3 ENSGALG00000009250 190.00 1529.58 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
95. NDUFB9 ENSGALG00000042242 188.37 1516.46 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
96. RPL4 ENSGALG00000007711 187.97 1513.24 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
97. TPT1 ENSGALG00000028872 187.56 1509.94 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
98. SET ENSGALG00000004701 185.52 1493.52 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. RPL12 ENSGALG00000008806 182.68 1470.65 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
100. RPS3A ENSGALG00000010077 181.05 1457.53 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA