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Experiment Chicken_E3_posterior_slice_3, section s6.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4586.83 36922.65
2. MT-ATP6 MT-ATP6 2725.76 21941.58
3. MT-ND5 MT-ND5 2651.74 21345.74
4. EEF1A EEF1A 2018.72 16250.11
5. gga-mir-3527 gga-mir-3527 2004.79 16137.98
6. MT-CO1 MT-CO1 1931.73 15549.87
7. MT-CYB MT-CYB 1779.36 14323.33
8. MT-ND4 MT-ND4 1654.39 13317.36
9. gga-mir-3533 ENSGALG00000027736 1209.79 9738.46 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. GAPDH ENSGALG00000014442 1132.89 9119.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1126.16 9065.26
12. MT-ND3 MT-ND3 1047.33 8430.70
13. PPIA ENSGALG00000028600 827.68 6662.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 758.94 6109.25 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 711.36 5726.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 671.47 5405.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPS3 ENSGALG00000017330 554.67 4464.93 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPS7 ENSGALG00000016392 552.75 4449.48 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
19. RPL26 RPL26 538.81 4337.26
20. EIF4G2 ENSGALG00000005587 534.48 4302.41 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. RPL7 ENSGALG00000035252 511.41 4116.70 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
22. CIRBP ENSGALG00000030918 509.49 4101.25 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
23. RPL7A ENSGALG00000003197 482.09 3880.68 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL27A ENSGALG00000005948 460.94 3710.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPL23 ENSGALG00000001634 422.49 3400.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
26. ENO1 ENSGALG00000002377 416.72 3354.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPS20 ENSGALG00000014432 413.84 3331.29 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
28. MDK ENSGALG00000008367 404.71 3257.80 midkine [Source:NCBI gene;Acc:423196]
29. RAN ENSGALG00000002569 397.50 3199.76 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. RPL15 ENSGALG00000011290 390.29 3141.72 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL18A 380.19 3060.42 ribosomal protein L18a
32. RPS10 ENSGALG00000002813 374.91 3017.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. RPS23 ENSGALG00000015617 369.14 2971.47 ribosomal protein S23
34. STMN1 ENSGALG00000001475 357.12 2874.71 stathmin 1 [Source:NCBI gene;Acc:396057]
35. RPS6 ENSGALG00000015082 340.30 2739.32 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
36. H3-IX H3-IX 339.82 2735.45
37. TMSB4X ENSGALG00000026383 338.38 2723.86 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. RPS4 RPS4 335.97 2704.46
39. RPS16 ENSGALG00000026490 329.72 2654.15 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPL31 ENSGALG00000016775 328.76 2646.42 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPS11 ENSGALG00000017299 324.44 2611.65 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. SLC25A6_1 ENSGALG00000016691 318.67 2565.20 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
43. RPS12 ENSGALG00000013990 310.02 2495.57 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. EEF1B2 ENSGALG00000008590 303.29 2441.40 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. SNRPG ENSGALG00000028409 300.41 2418.21 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
46. H2AFZ ENSGALG00000014023 297.52 2394.95 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
47. ATP6V0C ENSGALG00000009229 293.20 2360.18 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
48. ENSGALG00000028992 ENSGALG00000028992 290.79 2340.78
49. RPS24 ENSGALG00000004871 290.31 2336.91 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
50. RPSA 278.78 2244.10 ribosomal protein SA
51. FKBP4 ENSGALG00000014331 276.85 2228.56 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
52. RPS15A ENSGALG00000006771 276.85 2228.56 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. BTF3L4 ENSGALG00000010570 274.93 2213.11 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
54. RPL27 ENSGALG00000002837 273.97 2205.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. RPS27A ENSGALG00000036790 273.49 2201.52 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. HMGN5 ENSGALG00000007131 271.09 2182.20 high mobility group nucleosome binding domain 5, transcript variant X1
57. RPS29 ENSGALG00000012229 270.61 2178.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
58. LDHB ENSGALG00000035836 267.24 2151.20 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. RPL21 ENSGALG00000027035 263.40 2120.29 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPL36 ENSGALG00000000474 255.22 2054.45 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
61. CDK1 ENSGALG00000003085 252.34 2031.26 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
62. RPL14 ENSGALG00000043379 249.94 2011.94 ribosomal protein L14
63. MT-ND2 MT-ND2 244.65 1969.36
64. ATP5G3 241.29 1942.31 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. RPL32 ENSGALG00000027142 241.29 1942.31 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
66. ERH ENSGALG00000017384 238.40 1919.05 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
67. RPL35A ENSGALG00000007611, ENSGALG00000041230 237.92 1915.19 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
68. CNN3 ENSGALG00000005597 233.60 1880.41 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
69. EIF4EBP1 ENSGALG00000003205 232.15 1868.74 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
70. RPL23A ENSGALG00000003966 230.71 1857.15 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
71. RPS14 ENSGALG00000004588 230.71 1857.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. RPL10A ENSGALG00000002644 227.35 1830.10 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. ENSGALG00000018386 ENSGALG00000018386 225.90 1818.43
74. NDUFB9 ENSGALG00000042242 224.94 1810.70 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
75. HNRNPDL ENSGALG00000023199 223.02 1795.25 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
76. EIF1 ENSGALG00000028517 220.62 1775.93 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
77. RPS3A ENSGALG00000010077 219.18 1764.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
78. ENSGALG00000018384 ENSGALG00000018384 218.70 1760.47
79. RPL4 ENSGALG00000007711 216.29 1741.07 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
80. ALDH1A2 ENSGALG00000004270 212.45 1710.16 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
81. CRHOA CRHOA 211.49 1702.43
82. TCF12 ENSGALG00000004304 211.00 1698.49 transcription factor 12 [Source:NCBI gene;Acc:396334]
83. RPL38 ENSGALG00000001465 210.04 1690.76 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. RPS15 ENSGALG00000015195 208.12 1675.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
85. RPL13 ENSGALG00000006179 203.79 1640.45 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
86. RPS21 ENSGALG00000005338 202.35 1628.86 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
87. MIF ENSGALG00000006326 200.43 1613.40 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
88. HSPE1 ENSGALG00000009070 195.62 1574.68 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
89. HMGB2 ENSGALG00000010745 195.14 1570.82 high mobility group box 2 [Source:NCBI gene;Acc:396482]
90. RPL3 ENSGALG00000012172 195.14 1570.82 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
91. RPL29 ENSGALG00000026978 194.18 1563.09 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
92. RPLP1 ENSGALG00000030878 194.18 1563.09 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
93. ENSGALG00000002696 ENSGALG00000002696 192.26 1547.64
94. TCEB3 ENSGALG00000034625 192.26 1547.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
95. HNRNPA3 ENSGALG00000009250 191.78 1543.77 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. KPNA2 ENSGALG00000003584 186.97 1505.05 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
97. PRDX1 ENSGALG00000010243 184.57 1485.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. RPL6 ENSGALG00000004818 183.13 1474.14 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
99. HMGN2 HMGN2 182.65 1470.28
100. TPT1 ENSGALG00000028872 176.40 1419.97 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA