Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s5.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4528.47 36454.01
2. MT-ND5 MT-ND5 3479.32 28008.39
3. MT-ATP6 MT-ATP6 3285.40 26447.34
4. MT-CYB MT-CYB 2252.47 18132.30
5. gga-mir-3527 gga-mir-3527 2146.18 17276.67
6. EEF1A EEF1A 1964.42 15813.50
7. MT-CO1 MT-CO1 1895.86 15261.60
8. MT-ND4 MT-ND4 1784.29 14363.47
9. gga-mir-3533 ENSGALG00000027736 1773.74 14278.54 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1618.36 13027.74
11. GAPDH ENSGALG00000014442 1196.02 9627.91 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1047.53 8432.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 826.01 6649.35
14. NME2 ENSGALG00000002932 748.12 6022.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 671.85 5408.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 570.42 4591.86 midkine [Source:NCBI gene;Acc:423196]
17. RPL8 ENSGALG00000016232 544.46 4382.88 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. EIF4G2 ENSGALG00000005587 524.17 4219.55 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPS3 ENSGALG00000017330 486.44 3915.82 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
20. RPL7 ENSGALG00000035252 481.57 3876.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. CIRBP ENSGALG00000030918 467.37 3762.31 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
22. RPL26 RPL26 439.78 3540.21
23. ENO1 ENSGALG00000002377 428.83 3452.06 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPL7A ENSGALG00000003197 417.06 3357.32 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RAN ENSGALG00000002569 407.33 3278.99 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
26. ATP6V0C ENSGALG00000009229 401.24 3229.97 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
27. RPS7 ENSGALG00000016392 395.97 3187.54 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPL18A 394.34 3174.42 ribosomal protein L18a
29. RPS4 RPS4 378.93 3050.37
30. RPS23 ENSGALG00000015617 372.84 3001.35 ribosomal protein S23
31. TMSB4X ENSGALG00000026383 365.95 2945.88 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPL15 ENSGALG00000011290 361.89 2913.20 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPL27A ENSGALG00000005948 352.96 2841.31 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL23 ENSGALG00000001634 349.72 2815.23 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. STMN1 ENSGALG00000001475 347.28 2795.59 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPS27A ENSGALG00000036790 341.20 2746.65 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. ATP5G3 321.72 2589.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
38. MT-ND2 MT-ND2 321.32 2586.61
39. H3-IX H3-IX 320.51 2580.09
40. RPS6 ENSGALG00000015082 317.67 2557.23 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPS16 ENSGALG00000026490 307.12 2472.30 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. RPL31 ENSGALG00000016775 294.95 2374.34 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. ENSGALG00000018384 ENSGALG00000018384 294.54 2371.04
44. EIF1 ENSGALG00000028517 289.67 2331.83 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
45. RPL21 ENSGALG00000027035 289.27 2328.61 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. SLC25A6_1 ENSGALG00000016691 288.05 2318.79 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. LDHB ENSGALG00000035836 286.43 2305.75 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
48. RPS20 ENSGALG00000014432 286.02 2302.45 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
49. H2AFZ ENSGALG00000014023 281.96 2269.77 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
50. EEF1B2 ENSGALG00000008590 278.72 2243.69 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
51. RPS10 ENSGALG00000002813 278.31 2240.38 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
52. RPL32 ENSGALG00000027142 268.17 2158.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. SNRPG ENSGALG00000028409 266.55 2145.72 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
54. HMGN5 ENSGALG00000007131 265.74 2139.20 high mobility group nucleosome binding domain 5, transcript variant X1
55. FKBP4 ENSGALG00000014331 265.33 2135.90 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
56. RPS12 ENSGALG00000013990 258.84 2083.65 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
57. RPS24 ENSGALG00000004871 258.84 2083.65 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
58. RPS11 ENSGALG00000017299 258.03 2077.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. RPL35A ENSGALG00000007611, ENSGALG00000041230 248.70 2002.03 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
60. EIF4EBP1 ENSGALG00000003205 246.67 1985.68 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
61. RPL10A ENSGALG00000002644 236.12 1900.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
62. ANP32B ENSGALG00000037483 232.06 1868.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. CRHOA CRHOA 231.25 1861.55
64. RPL23A ENSGALG00000003966 231.25 1861.55 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
65. ENSGALG00000028992 ENSGALG00000028992 228.01 1835.47
66. HNRNPDL ENSGALG00000023199 228.01 1835.47 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
67. RPL27 ENSGALG00000002837 223.95 1802.79 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
68. TPT1 ENSGALG00000028872 221.51 1783.15 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
69. RPS15 ENSGALG00000015195 219.08 1763.59 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
70. BTF3L4 ENSGALG00000010570 218.67 1760.29 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
71. RPL36 ENSGALG00000000474 215.02 1730.90 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. RPS29 ENSGALG00000012229 215.02 1730.90 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. RPSA 213.40 1717.86 ribosomal protein SA
74. ERH ENSGALG00000017384 212.99 1714.56 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
75. RPS14 ENSGALG00000004588 212.99 1714.56 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
76. NONO ENSGALG00000005507 209.75 1688.48 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
77. EIF3F ENSGALG00000005326 208.53 1678.66 eukaryotic translation initiation factor 3 subunit F
78. HNRNPA3 ENSGALG00000009250 204.88 1649.28 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
79. NDUFB9 ENSGALG00000042242 204.48 1646.06 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
80. HMGB2 ENSGALG00000010745 203.26 1636.24 high mobility group box 2 [Source:NCBI gene;Acc:396482]
81. RPS15A ENSGALG00000006771 203.26 1636.24 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
82. CDK1 ENSGALG00000003085 202.85 1632.93 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
83. RPL14 ENSGALG00000043379 202.85 1632.93 ribosomal protein L14
84. HMGN2 HMGN2 200.82 1616.59
85. CNN3 ENSGALG00000005597 193.93 1561.13 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
86. MIF ENSGALG00000006326 193.93 1561.13 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
87. SNRPE ENSGALG00000000137 191.90 1544.79 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
88. HBE 191.49 1541.49 hemoglobin subunit epsilon
89. RPL38 ENSGALG00000001465 189.87 1528.45 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. RPLP1 ENSGALG00000030878 188.65 1518.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
91. RPL29 ENSGALG00000026978 187.84 1512.10 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
92. RPL4 ENSGALG00000007711 182.16 1466.38 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. ALDH1A2 ENSGALG00000004270 181.76 1463.16 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
94. IGF2BP3 ENSGALG00000010961 181.35 1459.86 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
95. TCF12 ENSGALG00000004304 179.73 1446.82 transcription factor 12 [Source:NCBI gene;Acc:396334]
96. HMGB1 ENSGALG00000042875 178.51 1437.00 high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. PRDX1 ENSGALG00000010243 176.08 1417.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. ENSGALG00000002696 ENSGALG00000002696 175.67 1414.14
99. HSPE1 ENSGALG00000009070 173.64 1397.80 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
100. RPL13 ENSGALG00000006179 171.21 1378.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA