Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s4.

Sample reads: 124,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5113.43 41160.59
2. MT-CO3 MT-CO3 3845.29 30952.69
3. MT-ND5 MT-ND5 3342.96 26909.18
4. MT-CYB MT-CYB 2284.95 18392.72
5. gga-mir-3527 gga-mir-3527 1985.40 15981.49
6. MT-CO1 MT-CO1 1965.92 15824.69
7. EEF1A EEF1A 1777.18 14305.42
8. gga-mir-3533 ENSGALG00000027736 1671.48 13454.59 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 1629.96 13120.37
10. MT-ND1 MT-ND1 1464.54 11788.83
11. GAPDH ENSGALG00000014442 1276.76 10277.29 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 981.04 7896.89 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 913.98 7357.09
14. NME2 ENSGALG00000002932 830.31 6683.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 617.94 4974.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 554.39 4462.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. MDK ENSGALG00000008367 506.49 4076.99 midkine [Source:NCBI gene;Acc:423196]
18. RPL7A ENSGALG00000003197 499.78 4022.98 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. EIF4G2 ENSGALG00000005587 488.29 3930.49 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. RPS3 ENSGALG00000017330 482.86 3886.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL15 ENSGALG00000011290 466.89 3758.23 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL7 ENSGALG00000035252 454.75 3660.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL26 RPL26 451.88 3637.41
24. RPS7 ENSGALG00000016392 431.12 3470.30 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. ENSGALG00000018384 ENSGALG00000018384 413.24 3326.38
26. CIRBP ENSGALG00000030918 410.05 3300.70 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. RPL18A 402.70 3241.54 ribosomal protein L18a
28. MT-ND2 MT-ND2 388.01 3123.29
29. RPL27A ENSGALG00000005948 377.79 3041.02 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RAN ENSGALG00000002569 375.56 3023.07 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
31. ATP6V0C ENSGALG00000009229 371.40 2989.59 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. ENO1 ENSGALG00000002377 357.99 2881.64 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. RPS20 ENSGALG00000014432 351.29 2827.71 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
34. TMSB4X ENSGALG00000026383 344.90 2776.27 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. RPS4 RPS4 339.79 2735.14
36. RPS6 ENSGALG00000015082 336.28 2706.89 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. STMN1 ENSGALG00000001475 325.42 2619.47 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPS10 ENSGALG00000002813 324.46 2611.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
39. RPS23 ENSGALG00000015617 319.35 2570.61 ribosomal protein S23
40. SNRPG ENSGALG00000028409 305.62 2460.09 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
41. LDHB ENSGALG00000035836 303.06 2439.48 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
42. RPL4 ENSGALG00000007711 303.06 2439.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
43. EIF1 ENSGALG00000028517 300.19 2416.38 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
44. RPS16 ENSGALG00000026490 300.19 2416.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPL31 ENSGALG00000016775 299.87 2413.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. RPS27A ENSGALG00000036790 296.04 2382.98 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. RPL27 ENSGALG00000002837 293.16 2359.79 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. RPS11 ENSGALG00000017299 292.52 2354.64 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. FKBP4 ENSGALG00000014331 285.50 2298.13 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
50. H2AFZ ENSGALG00000014023 283.58 2282.68 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
51. RPS12 ENSGALG00000013990 282.94 2277.53 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. H3-IX H3-IX 281.03 2262.15
53. EEF1B2 ENSGALG00000008590 279.11 2246.70 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
54. RPL23 ENSGALG00000001634 278.79 2244.12 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
55. ATP5G3 273.68 2202.99 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
56. RPL21 ENSGALG00000027035 269.85 2172.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. SLC25A6_1 ENSGALG00000016691 264.42 2128.45 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. RPL32 ENSGALG00000027142 255.16 2053.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. RPSA 248.14 1997.40 ribosomal protein SA
60. HMGN5 ENSGALG00000007131 246.86 1987.10 high mobility group nucleosome binding domain 5, transcript variant X1
61. ENSGALG00000018386 ENSGALG00000018386 238.55 1920.21
62. ENSGALG00000028992 ENSGALG00000028992 236.00 1899.68
63. RPS24 ENSGALG00000004871 235.68 1897.11 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. MIF ENSGALG00000006326 234.40 1886.80 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
65. CNN3 ENSGALG00000005597 229.61 1848.25 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
66. ERH ENSGALG00000017384 226.42 1822.57 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
67. RPS15A ENSGALG00000006771 225.78 1817.42 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. NDUFB9 ENSGALG00000042242 225.46 1814.84 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
69. RPS14 ENSGALG00000004588 222.27 1789.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. ANP32B ENSGALG00000037483 220.03 1771.13 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. CDK1 ENSGALG00000003085 218.44 1758.33 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
72. RPS29 ENSGALG00000012229 217.80 1753.18 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. RPL35A ENSGALG00000007611, ENSGALG00000041230 216.52 1742.88 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
74. ENSGALG00000002696 ENSGALG00000002696 216.20 1740.30
75. CRHOA CRHOA 215.88 1737.73
76. SNRPE ENSGALG00000000137 215.88 1737.73 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
77. RPL14 ENSGALG00000043379 212.69 1712.05 ribosomal protein L14
78. RPL10A ENSGALG00000002644 212.37 1709.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. HMGN2 HMGN2 211.41 1701.75
80. RPLP1 ENSGALG00000030878 209.81 1688.87 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. RPS15 ENSGALG00000015195 209.17 1683.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
82. RPL23A ENSGALG00000003966 208.22 1676.07 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
83. RPS8 ENSGALG00000010124 208.22 1676.07 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
84. EIF4EBP1 ENSGALG00000003205 204.70 1647.73 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
85. RPL36 ENSGALG00000000474 204.70 1647.73 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
86. RPL38 ENSGALG00000001465 204.06 1642.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
87. BTF3L4 ENSGALG00000010570 203.75 1640.09 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. NONO ENSGALG00000005507 196.72 1583.50 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
89. RPL6 ENSGALG00000004818 194.16 1562.89 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
90. HNRNPDL ENSGALG00000023199 193.53 1557.82 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
91. RPL3 ENSGALG00000012172 193.53 1557.82 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
92. TPT1 ENSGALG00000028872 193.21 1555.25 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
93. HMGB2 ENSGALG00000010745 192.25 1547.52 high mobility group box 2 [Source:NCBI gene;Acc:396482]
94. RPL12 ENSGALG00000008806 190.01 1529.49 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. HMGB1 ENSGALG00000042875 181.71 1462.68 high mobility group box 1 [Source:NCBI gene;Acc:395724]
96. EIF3F ENSGALG00000005326 177.56 1429.27 eukaryotic translation initiation factor 3 subunit F
97. RPS21 ENSGALG00000005338 177.24 1426.69 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
98. RPL29 ENSGALG00000026978 176.92 1424.12 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
99. HSPE1 ENSGALG00000009070 176.28 1418.97 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
100. EIF5A2 ENSGALG00000009309 174.68 1406.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA