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Experiment Chicken_E3_posterior_slice_3, section s31.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4266.45 34342.91
2. MT-CO3 MT-CO3 4135.89 33291.97
3. MT-CYB MT-CYB 2341.70 18849.58
4. MT-ND5 MT-ND5 2206.93 17764.75
5. MT-ND4 MT-ND4 2114.27 17018.88
6. EEF1A EEF1A 2034.25 16374.75
7. gga-mir-3527 gga-mir-3527 2008.98 16171.34
8. gga-mir-3533 ENSGALG00000027736 1962.65 15798.41 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND3 MT-ND3 1739.43 14001.59
10. MT-CO1 MT-CO1 1474.09 11865.73
11. MT-ND1 MT-ND1 1389.86 11187.72
12. GAPDH ENSGALG00000014442 1343.53 10814.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1073.98 8645.03 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 956.06 7695.83 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 715.99 5763.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL15 ENSGALG00000011290 602.27 4847.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPL27A ENSGALG00000005948 585.43 4712.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPL8 ENSGALG00000016232 547.52 4407.28 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. HBE 480.13 3864.82 hemoglobin subunit epsilon
20. MDK ENSGALG00000008367 480.13 3864.82 midkine [Source:NCBI gene;Acc:423196]
21. HBZ ENSGALG00000023740 471.71 3797.04 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
22. RPL18A 471.71 3797.04 ribosomal protein L18a
23. KRT19 ENSGALG00000019719 467.50 3763.15 keratin 19 [Source:NCBI gene;Acc:395861]
24. LUM ENSGALG00000011271 459.08 3695.38 lumican [Source:NCBI gene;Acc:417891]
25. RPL7A ENSGALG00000003197 459.08 3695.38 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS3 ENSGALG00000017330 438.02 3525.85 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPS16 ENSGALG00000026490 433.81 3491.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
28. RPL26 RPL26 425.38 3424.11
29. STMN1 ENSGALG00000001475 425.38 3424.11 stathmin 1 [Source:NCBI gene;Acc:396057]
30. RPS4 RPS4 421.17 3390.22
31. ENO1 ENSGALG00000002377 416.96 3356.33 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
32. RPL7 ENSGALG00000035252 416.96 3356.33 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
33. ENSGALG00000018384 ENSGALG00000018384 412.75 3322.44
34. EIF4G2 ENSGALG00000005587 408.53 3288.47 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
35. HBG1 HBG1 408.53 3288.47
36. TMSB4X ENSGALG00000026383 408.53 3288.47 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. RPS23 ENSGALG00000015617 404.32 3254.59 ribosomal protein S23
38. RPL31 ENSGALG00000016775 395.90 3186.81 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. RPS20 ENSGALG00000014432 387.48 3119.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
40. RPS7 ENSGALG00000016392 379.05 3051.17 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
41. ATP6V0C ENSGALG00000009229 370.63 2983.40 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
42. RPS15 ENSGALG00000015195 366.42 2949.51 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. MT-ND2 MT-ND2 353.78 2847.76
44. CIRBP ENSGALG00000030918 345.36 2779.99 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
45. RPL21 ENSGALG00000027035 345.36 2779.99 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. RPS10 ENSGALG00000002813 345.36 2779.99 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
47. RPL23 ENSGALG00000001634 341.15 2746.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
48. RPSA 336.94 2712.21 ribosomal protein SA
49. RPS6 ENSGALG00000015082 332.72 2678.24 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
50. H3-IX H3-IX 320.09 2576.57
51. RPL27 ENSGALG00000002837 320.09 2576.57 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. EIF4EBP1 ENSGALG00000003205 315.88 2542.69 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
53. RPS12 ENSGALG00000013990 315.88 2542.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPS27A ENSGALG00000036790 311.67 2508.80 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. ENSGALG00000028992 ENSGALG00000028992 303.24 2440.94
56. RPL32 ENSGALG00000027142 303.24 2440.94 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. CRHOA CRHOA 299.03 2407.05
58. RAN ENSGALG00000002569 294.82 2373.16 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
59. RPL10A ENSGALG00000002644 294.82 2373.16 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. RPS24 ENSGALG00000004871 290.61 2339.27 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
61. EEF1B2 ENSGALG00000008590 282.18 2271.42 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
62. RPL14 ENSGALG00000043379 282.18 2271.42 ribosomal protein L14
63. RPS29 ENSGALG00000012229 282.18 2271.42 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. SLC25A6_1 ENSGALG00000016691 282.18 2271.42 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
65. TPT1 ENSGALG00000028872 273.76 2203.64 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
66. ATP5G3 265.34 2135.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. RPL23A ENSGALG00000003966 261.13 2101.97 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
68. NDUFB9 ENSGALG00000042242 252.70 2034.12 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
69. ENSGALG00000002696 ENSGALG00000002696 248.49 2000.23
70. RPL13 ENSGALG00000006179 248.49 2000.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
71. RPL29 ENSGALG00000026978 248.49 2000.23 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
72. SNRPG ENSGALG00000028409 248.49 2000.23 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
73. RPS11 ENSGALG00000017299 244.28 1966.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
74. CNN3 ENSGALG00000005597 240.07 1932.45 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
75. DSP ENSGALG00000012790 231.64 1864.59 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
76. ENSGALG00000018386 ENSGALG00000018386 231.64 1864.59
77. EIF1 ENSGALG00000028517 227.43 1830.70 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
78. RPL36 ENSGALG00000000474 227.43 1830.70 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. RPLP1 ENSGALG00000030878 227.43 1830.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
80. RPS21 ENSGALG00000005338 227.43 1830.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
81. ANP32B ENSGALG00000037483 223.22 1796.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
82. HMGB1 ENSGALG00000042875 223.22 1796.82 high mobility group box 1 [Source:NCBI gene;Acc:395724]
83. RPL12 ENSGALG00000008806 223.22 1796.82 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
84. RPS15A ENSGALG00000006771 223.22 1796.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
85. S100A11 ENSGALG00000036711 223.22 1796.82 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
86. H2AFZ ENSGALG00000014023 219.01 1762.93 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
87. RPL3 ENSGALG00000012172 214.80 1729.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. RPL4 ENSGALG00000007711 214.80 1729.04 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
89. RPS14 ENSGALG00000004588 210.58 1695.07 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
90. RPS3A ENSGALG00000010077 210.58 1695.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
91. FTH FTH 206.37 1661.18
92. RPL38 ENSGALG00000001465 206.37 1661.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
93. MT-ND6 MT-ND6 197.95 1593.40
94. TXN ENSGALG00000015704 197.95 1593.40 thioredoxin [Source:NCBI gene;Acc:396437]
95. EEF1D 193.74 1559.52 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. HMGN2 HMGN2 193.74 1559.52
97. TCEB3 ENSGALG00000034625 193.74 1559.52 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. HNRNPA3 ENSGALG00000009250 189.53 1525.63 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
99. RPL6 ENSGALG00000004818 189.53 1525.63 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
100. RPS2 ENSGALG00000005490 189.53 1525.63 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA