Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s30.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4276.19 34421.35
2. MT-ND5 MT-ND5 3464.26 27885.69
3. MT-ATP6 MT-ATP6 3318.27 26710.54
4. MT-CYB MT-CYB 2024.10 16293.07
5. MT-ND4 MT-ND4 1881.39 15144.32
6. EEF1A EEF1A 1878.11 15117.92
7. gga-mir-3533 ENSGALG00000027736 1863.35 14999.11 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. gga-mir-3527 gga-mir-3527 1737.05 13982.45
9. MT-ND3 MT-ND3 1681.28 13533.53
10. MT-CO1 MT-CO1 1535.30 12358.46
11. GAPDH ENSGALG00000014442 1438.52 11579.42 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND1 MT-ND1 1397.51 11249.31
13. PPIA ENSGALG00000028600 1095.70 8819.88 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 808.66 6509.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 728.28 5862.32 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 725.00 5835.92 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL7A ENSGALG00000003197 552.77 4449.54 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. STMN1 ENSGALG00000001475 544.57 4383.54 stathmin 1 [Source:NCBI gene;Acc:396057]
19. KRT19 ENSGALG00000019719 501.92 4040.22 keratin 19 [Source:NCBI gene;Acc:395861]
20. RPL26 RPL26 492.08 3961.02
21. MDK ENSGALG00000008367 488.80 3934.61 midkine [Source:NCBI gene;Acc:423196]
22. RPL7 ENSGALG00000035252 488.80 3934.61 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPS7 ENSGALG00000016392 488.80 3934.61 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPS20 ENSGALG00000014432 475.68 3829.00 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
25. ENSGALG00000018384 ENSGALG00000018384 457.64 3683.79
26. RPL15 ENSGALG00000011290 451.08 3630.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL27A ENSGALG00000005948 444.51 3578.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS3 ENSGALG00000017330 437.95 3525.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
29. TMSB4X ENSGALG00000026383 436.31 3512.09 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
30. EIF4G2 ENSGALG00000005587 429.75 3459.29 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. ENO1 ENSGALG00000002377 423.19 3406.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
32. RPS4 RPS4 401.87 3234.87
33. RPS10 ENSGALG00000002813 388.74 3129.18 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
34. HBG1 HBG1 378.90 3049.97
35. RPL31 ENSGALG00000016775 377.26 3036.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
36. RPS11 ENSGALG00000017299 375.62 3023.57 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
37. RPS12 ENSGALG00000013990 360.86 2904.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. MT-ND2 MT-ND2 359.22 2891.56
39. RPL18A 359.22 2891.56 ribosomal protein L18a
40. HBE 351.02 2825.55 hemoglobin subunit epsilon
41. RPS23 ENSGALG00000015617 349.38 2812.35 ribosomal protein S23
42. RPS6 ENSGALG00000015082 346.10 2785.95 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. LUM ENSGALG00000011271 341.18 2746.34 lumican [Source:NCBI gene;Acc:417891]
44. RPL21 ENSGALG00000027035 341.18 2746.34 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. EEF1B2 ENSGALG00000008590 334.62 2693.54 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
46. RPL4 ENSGALG00000007711 328.05 2640.65 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
47. CIRBP ENSGALG00000030918 324.77 2614.25 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
48. H3-IX H3-IX 319.85 2574.64
49. ATP5G3 316.57 2548.24 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. RPSA 316.57 2548.24 ribosomal protein SA
51. HBZ ENSGALG00000023740 313.29 2521.84 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
52. RPL23 ENSGALG00000001634 310.01 2495.44 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
53. RPS16 ENSGALG00000026490 308.37 2482.24 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. ENSGALG00000028992 ENSGALG00000028992 298.53 2403.03
55. RPL27 ENSGALG00000002837 293.61 2363.42 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
56. RPL14 ENSGALG00000043379 290.33 2337.02 ribosomal protein L14
57. RPL32 ENSGALG00000027142 290.33 2337.02 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
58. RPS24 ENSGALG00000004871 287.05 2310.62 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
59. TPT1 ENSGALG00000028872 283.77 2284.22 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
60. RPS15A ENSGALG00000006771 282.13 2271.02 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
61. ATP6V0C ENSGALG00000009229 275.57 2218.21 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
62. RAN ENSGALG00000002569 273.93 2205.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. RPS15 ENSGALG00000015195 269.00 2165.33 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
64. RPL23A ENSGALG00000003966 265.72 2138.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
65. RPS3A ENSGALG00000010077 257.52 2072.92 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. RPS14 ENSGALG00000004588 255.88 2059.72 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. RPS27A ENSGALG00000036790 255.88 2059.72 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
68. ENSGALG00000018386 ENSGALG00000018386 254.24 2046.51
69. NDUFB9 ENSGALG00000042242 250.96 2020.11 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
70. EIF1 ENSGALG00000028517 249.32 2006.91 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
71. SLC25A6_1 ENSGALG00000016691 249.32 2006.91 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
72. CRHOA CRHOA 246.04 1980.51
73. RPS29 ENSGALG00000012229 244.40 1967.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. HMGN5 ENSGALG00000007131 242.76 1954.11 high mobility group nucleosome binding domain 5, transcript variant X1
75. RPS8 ENSGALG00000010124 241.12 1940.90 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
76. MT-ND6 MT-ND6 237.84 1914.50
77. EIF4EBP1 ENSGALG00000003205 232.92 1874.90 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
78. CNN3 ENSGALG00000005597 231.28 1861.70 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
79. PNRC1 ENSGALG00000015780 228.00 1835.29 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
80. RPLP1 ENSGALG00000030878 228.00 1835.29 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. ENSGALG00000002696 ENSGALG00000002696 223.08 1795.69
82. SNRPG ENSGALG00000028409 218.16 1756.09 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. RPL10A ENSGALG00000002644 216.52 1742.89 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 216.52 1742.89 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. RPL36 ENSGALG00000000474 216.52 1742.89 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
86. FKBP4 ENSGALG00000014331 213.24 1716.48 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
87. TTR ENSGALG00000015143 209.96 1690.08 transthyretin [Source:NCBI gene;Acc:396277]
88. RPL6 ENSGALG00000004818 208.31 1676.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
89. RPS21 ENSGALG00000005338 208.31 1676.80 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
90. ERH ENSGALG00000017384 203.39 1637.20 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
91. RPL13 ENSGALG00000006179 203.39 1637.20 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
92. RPL3 ENSGALG00000012172 203.39 1637.20 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. RPL38 ENSGALG00000001465 203.39 1637.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
94. DSP ENSGALG00000012790 200.11 1610.79 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
95. RPL29 ENSGALG00000026978 196.83 1584.39 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
96. EIF3F ENSGALG00000005326 195.19 1571.19 eukaryotic translation initiation factor 3 subunit F
97. HMGN2 HMGN2 195.19 1571.19
98. SNRPE ENSGALG00000000137 195.19 1571.19 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
99. ANP32B ENSGALG00000037483 190.27 1531.59 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
100. H2AFZ ENSGALG00000014023 186.99 1505.18 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA