Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s3.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4707.28 37892.76
2. MT-ATP6 MT-ATP6 4180.44 33651.79
3. MT-ND5 MT-ND5 3090.68 24879.42
4. MT-CYB MT-CYB 2192.02 17645.37
5. gga-mir-3527 gga-mir-3527 2084.86 16782.75
6. MT-CO1 MT-CO1 1893.41 15241.61
7. EEF1A EEF1A 1746.97 14062.80
8. gga-mir-3533 ENSGALG00000027736 1649.82 13280.76 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-ND4 MT-ND4 1601.95 12895.41
10. MT-ND1 MT-ND1 1362.64 10969.01
11. GAPDH ENSGALG00000014442 1171.55 9430.77 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1131.90 9111.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. MT-ND3 MT-ND3 896.88 7219.72
14. NME2 ENSGALG00000002932 795.08 6400.25 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 682.21 5491.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. CIRBP ENSGALG00000030918 585.78 4715.42 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
17. RPL8 ENSGALG00000016232 531.84 4281.22 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPS3 ENSGALG00000017330 519.34 4180.59 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL26 RPL26 515.05 4146.06
20. RPL18A 514.70 4143.24 ribosomal protein L18a
21. MDK ENSGALG00000008367 512.20 4123.12 midkine [Source:NCBI gene;Acc:423196]
22. EIF4G2 ENSGALG00000005587 500.05 4025.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPL15 ENSGALG00000011290 474.69 3821.17 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPS4 RPS4 417.19 3358.30
25. RPL7A ENSGALG00000003197 414.33 3335.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPL27A ENSGALG00000005948 402.54 3240.37 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RAN ENSGALG00000002569 390.76 3145.55 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
28. RPS7 ENSGALG00000016392 390.76 3145.55 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
29. RPL7 ENSGALG00000035252 388.61 3128.24 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
30. RPL31 ENSGALG00000016775 363.25 2924.10 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
31. ATP6V0C ENSGALG00000009229 352.54 2837.88 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
32. ENO1 ENSGALG00000002377 349.68 2814.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. RPS23 ENSGALG00000015617 345.04 2777.51 ribosomal protein S23
34. RPS11 ENSGALG00000017299 336.82 2711.34 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. LDHB ENSGALG00000035836 333.61 2685.50 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
36. TMSB4X ENSGALG00000026383 332.89 2679.70 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
37. STMN1 ENSGALG00000001475 331.82 2671.09 stathmin 1 [Source:NCBI gene;Acc:396057]
38. RPS6 ENSGALG00000015082 315.75 2541.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPS16 ENSGALG00000026490 310.75 2501.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPS27A ENSGALG00000036790 310.75 2501.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. MT-ND2 MT-ND2 305.75 2461.23
42. H3-IX H3-IX 303.25 2441.11
43. RPS20 ENSGALG00000014432 300.75 2420.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
44. RPL23 ENSGALG00000001634 292.89 2357.71 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
45. SLC25A6_1 ENSGALG00000016691 291.10 2343.30 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
46. ATP5G3 282.17 2271.42 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
47. EEF1B2 ENSGALG00000008590 279.32 2248.48 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
48. RPS10 ENSGALG00000002813 278.96 2245.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
49. FKBP4 ENSGALG00000014331 277.17 2231.17 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
50. SNRPG ENSGALG00000028409 272.53 2193.82 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. RPS15 ENSGALG00000015195 272.17 2190.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
52. ENSGALG00000018384 ENSGALG00000018384 270.74 2179.41
53. RPS12 ENSGALG00000013990 270.74 2179.41 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPSA 266.46 2144.96 ribosomal protein SA
55. RPL21 ENSGALG00000027035 266.10 2142.06 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. ANP32B ENSGALG00000037483 265.03 2133.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
57. HMGN5 ENSGALG00000007131 258.96 2084.58 high mobility group nucleosome binding domain 5, transcript variant X1
58. RPL32 ENSGALG00000027142 257.17 2070.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
59. H2AFZ ENSGALG00000014023 253.60 2041.43 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
60. RPL27 ENSGALG00000002837 252.53 2032.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
61. RPS24 ENSGALG00000004871 243.24 1958.04 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. RPL23A ENSGALG00000003966 242.88 1955.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
63. EIF1 ENSGALG00000028517 240.74 1937.91 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
64. ENSGALG00000028992 ENSGALG00000028992 240.38 1935.02
65. ERH ENSGALG00000017384 240.03 1932.20 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
66. RPS29 ENSGALG00000012229 236.45 1903.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
67. RPL14 ENSGALG00000043379 231.10 1860.31 ribosomal protein L14
68. RPL35A ENSGALG00000007611, ENSGALG00000041230 227.88 1834.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
69. CRHOA CRHOA 223.24 1797.04
70. CDK1 ENSGALG00000003085 217.88 1753.89 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
71. RPS15A ENSGALG00000006771 216.81 1745.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
72. ENSGALG00000018386 ENSGALG00000018386 216.09 1739.49
73. NONO ENSGALG00000005507 215.74 1736.67 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
74. ENSGALG00000002696 ENSGALG00000002696 211.09 1699.24
75. RPL4 ENSGALG00000007711 209.66 1687.73 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
76. EIF4EBP1 ENSGALG00000003205 209.31 1684.91 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
77. RPL36 ENSGALG00000000474 207.16 1667.60 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. HSPE1 ENSGALG00000009070 205.38 1653.27 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
79. RPL10A ENSGALG00000002644 203.95 1641.76 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
80. SNRPE ENSGALG00000000137 202.52 1630.25 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
81. MIF ENSGALG00000006326 199.66 1607.23 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
82. RPL6 ENSGALG00000004818 196.81 1584.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
83. HNRNPA3 ENSGALG00000009250 195.38 1572.77 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
84. RPLP1 ENSGALG00000030878 193.59 1558.36 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
85. RPS14 ENSGALG00000004588 192.52 1549.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
86. RPS3A ENSGALG00000010077 187.52 1509.50 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
87. HNRNPDL ENSGALG00000023199 185.02 1489.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. RPL29 ENSGALG00000026978 183.23 1474.97 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
89. RPS8 ENSGALG00000010124 182.88 1472.15 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
90. HMGB1 ENSGALG00000042875 182.16 1466.36 high mobility group box 1 [Source:NCBI gene;Acc:395724]
91. RPL38 ENSGALG00000001465 181.80 1463.46 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
92. HMGB2 ENSGALG00000010745 181.09 1457.74 high mobility group box 2 [Source:NCBI gene;Acc:396482]
93. NDUFB9 ENSGALG00000042242 177.52 1429.00 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
94. KPNA2 ENSGALG00000003584 176.09 1417.49 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
95. PRDX1 ENSGALG00000010243 176.09 1417.49 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. EIF5A2 ENSGALG00000009309 175.73 1414.59 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
97. HMGN2 HMGN2 175.73 1414.59
98. CCT6 CCT6 172.88 1391.65
99. RPL3 ENSGALG00000012172 172.52 1388.76 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
100. TPT1 ENSGALG00000028872 172.52 1388.76 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA