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Experiment Chicken_E3_posterior_slice_3, section s28.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4572.88 36809.55
2. MT-CO3 MT-CO3 4489.47 36138.14
3. MT-ATP6 MT-ATP6 4284.26 34486.29
4. MT-ND4 MT-ND4 1976.64 15911.03
5. MT-CYB MT-CYB 1975.31 15900.32
6. gga-mir-3527 gga-mir-3527 1936.92 15591.30
7. gga-mir-3533 ENSGALG00000027736 1706.56 13737.01 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-CO1 MT-CO1 1613.88 12990.98
9. EEF1A EEF1A 1590.05 12799.16
10. MT-ND1 MT-ND1 1588.72 12788.45
11. GAPDH ENSGALG00000014442 1317.32 10603.81 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. ENSGALG00000018384 ENSGALG00000018384 1308.05 10529.19
13. MT-ND3 MT-ND3 1294.81 10422.62
14. PPIA ENSGALG00000028600 957.21 7705.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. NME2 ENSGALG00000002932 856.59 6895.15 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. MT-ND2 MT-ND2 767.88 6181.08
17. MDK ENSGALG00000008367 605.04 4870.29 midkine [Source:NCBI gene;Acc:423196]
18. RPL7 ENSGALG00000035252 583.86 4699.80 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
19. RPL5 ENSGALG00000005922 557.38 4486.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPL8 ENSGALG00000016232 513.69 4134.96 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. RPL7A ENSGALG00000003197 467.35 3761.95 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL26 RPL26 454.11 3655.37
23. EIF4G2 ENSGALG00000005587 450.14 3623.42 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. RPS7 ENSGALG00000016392 450.14 3623.42 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
25. RPL15 ENSGALG00000011290 426.31 3431.60 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPS20 ENSGALG00000014432 417.04 3356.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
27. RPS11 ENSGALG00000017299 409.10 3293.06 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. ENO1 ENSGALG00000002377 391.89 3154.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
29. EEF1B2 ENSGALG00000008590 390.56 3143.83 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
30. STMN1 ENSGALG00000001475 390.56 3143.83 stathmin 1 [Source:NCBI gene;Acc:396057]
31. RPL18A 373.35 3005.29 ribosomal protein L18a
32. RPL31 ENSGALG00000016775 362.76 2920.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
33. RPL27A ENSGALG00000005948 353.49 2845.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPS4 RPS4 349.52 2813.47
35. KRT19 ENSGALG00000019719 344.22 2770.81 keratin 19 [Source:NCBI gene;Acc:395861]
36. RPS23 ENSGALG00000015617 344.22 2770.81 ribosomal protein S23
37. LUM ENSGALG00000011271 341.58 2749.56 lumican [Source:NCBI gene;Acc:417891]
38. ENSGALG00000018386 ENSGALG00000018386 332.31 2674.94
39. HBE 324.36 2610.95 hemoglobin subunit epsilon
40. RPS10 ENSGALG00000002813 323.04 2600.32 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
41. RPSA 317.74 2557.66 ribosomal protein SA
42. H3-IX H3-IX 316.42 2547.03
43. RPS6 ENSGALG00000015082 316.42 2547.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. TMSB4X ENSGALG00000026383 305.83 2461.79 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. CIRBP ENSGALG00000030918 303.18 2440.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
46. RPS3 ENSGALG00000017330 303.18 2440.46 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
47. RPS27A ENSGALG00000036790 295.24 2376.54 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPS15A ENSGALG00000006771 287.29 2312.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. ATP6V0C ENSGALG00000009229 285.97 2301.92 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
50. RPL4 ENSGALG00000007711 275.38 2216.68 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
51. RAN ENSGALG00000002569 274.06 2206.06 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
52. TPT1 ENSGALG00000028872 274.06 2206.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
53. CRHOA CRHOA 272.73 2195.35
54. RPL21 ENSGALG00000027035 267.44 2152.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPS16 ENSGALG00000026490 267.44 2152.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL32 ENSGALG00000027142 263.46 2120.73 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. RPL35A ENSGALG00000007611, ENSGALG00000041230 263.46 2120.73 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
58. SLC25A6_1 ENSGALG00000016691 255.52 2056.82 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
59. HMGN2 HMGN2 247.58 1992.90
60. RPL13 ENSGALG00000006179 246.25 1982.20 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
61. RPL27 ENSGALG00000002837 243.60 1960.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
62. RPS12 ENSGALG00000013990 239.63 1928.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
63. HMGN5 ENSGALG00000007131 235.66 1896.95 high mobility group nucleosome binding domain 5, transcript variant X1
64. RPL6 ENSGALG00000004818 234.34 1886.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. RPS24 ENSGALG00000004871 234.34 1886.33 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. RPL10A ENSGALG00000002644 231.69 1865.00 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
67. RPL23 ENSGALG00000001634 227.72 1833.04 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. RPS21 ENSGALG00000005338 225.07 1811.71 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
69. HBG1 HBG1 222.42 1790.38
70. SNRPG ENSGALG00000028409 222.42 1790.38 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
71. EIF1 ENSGALG00000028517 221.10 1779.75 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
72. RPLP1 ENSGALG00000030878 221.10 1779.75 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
73. CNN3 ENSGALG00000005597 219.77 1769.05 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
74. RPS29 ENSGALG00000012229 219.77 1769.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
75. ENSGALG00000028992 ENSGALG00000028992 217.13 1747.80
76. ERH ENSGALG00000017384 217.13 1747.80 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
77. RPL14 ENSGALG00000043379 217.13 1747.80 ribosomal protein L14
78. RPS15 ENSGALG00000015195 214.48 1726.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
79. RPS14 ENSGALG00000004588 213.15 1715.76 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
80. RPL23A ENSGALG00000003966 210.51 1694.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
81. IGF2BP3 ENSGALG00000010961 206.53 1662.47 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
82. ANP32B ENSGALG00000037483 203.89 1641.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. EIF3F ENSGALG00000005326 203.89 1641.22 eukaryotic translation initiation factor 3 subunit F
84. RPS3A ENSGALG00000010077 201.24 1619.89 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
85. EIF4EBP1 ENSGALG00000003205 198.59 1598.56 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
86. NDUFB9 ENSGALG00000042242 195.94 1577.23 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
87. RPL38 ENSGALG00000001465 194.62 1566.60 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
88. RPL3 ENSGALG00000012172 193.29 1555.89 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. EEF1D 191.97 1545.27 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. ENSGALG00000002696 ENSGALG00000002696 191.97 1545.27
91. NONO ENSGALG00000005507 191.97 1545.27 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
92. ATP5G3 189.32 1523.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. RPL29 ENSGALG00000026978 188.00 1513.31 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. H2AFZ ENSGALG00000014023 186.68 1502.69 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
95. MT-ATP8 MT-ATP8 186.68 1502.69
96. TCEB3 ENSGALG00000034625 184.03 1481.36 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
97. FKBP4 ENSGALG00000014331 180.06 1449.40 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
98. RPL12 ENSGALG00000008806 180.06 1449.40 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
99. RPS2 ENSGALG00000005490 180.06 1449.40 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
100. MIF ENSGALG00000006326 178.73 1438.69 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA