Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s27.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4619.81 37185.62
2. MT-CO3 MT-CO3 4229.29 34042.26
3. MT-ND5 MT-ND5 3859.20 31063.34
4. MT-CYB MT-CYB 2186.11 17596.36
5. EEF1A EEF1A 1924.49 15490.54
6. gga-mir-3527 gga-mir-3527 1867.07 15028.36
7. gga-mir-3533 ENSGALG00000027736 1724.13 13877.81 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND4 MT-ND4 1661.60 13374.49
9. MT-ND1 MT-ND1 1628.42 13107.42
10. MT-ND3 MT-ND3 1476.55 11885.00
11. MT-CO1 MT-CO1 1465.07 11792.59
12. GAPDH ENSGALG00000014442 1327.24 10683.17 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1126.88 9070.44 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 1059.24 8526.00 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. ENSGALG00000018384 ENSGALG00000018384 648.30 5218.27
16. RPL5 ENSGALG00000005922 603.64 4858.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. RPL8 ENSGALG00000016232 585.77 4714.96 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. MDK ENSGALG00000008367 575.56 4632.78 midkine [Source:NCBI gene;Acc:423196]
19. RPL26 RPL26 516.86 4160.29
20. RPL7 ENSGALG00000035252 495.16 3985.62 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPL15 ENSGALG00000011290 491.33 3954.80 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 482.40 3882.92 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. MT-ND2 MT-ND2 463.26 3728.86
24. RPS3 ENSGALG00000017330 454.32 3656.90 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
25. RPL18A 449.22 3615.85 ribosomal protein L18a
26. HBG1 HBG1 439.01 3533.66
27. RPS7 ENSGALG00000016392 436.46 3513.14 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
28. RPL27A ENSGALG00000005948 435.18 3502.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS23 ENSGALG00000015617 426.25 3430.96 ribosomal protein S23
30. HBE 412.21 3317.95 hemoglobin subunit epsilon
31. RPS20 ENSGALG00000014432 402.00 3235.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
32. EEF1B2 ENSGALG00000008590 400.72 3225.46 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
33. RPL7A ENSGALG00000003197 399.45 3215.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS4 RPS4 395.62 3184.41
35. STMN1 ENSGALG00000001475 391.79 3153.58 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPS27A ENSGALG00000036790 382.86 3081.70 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPS11 ENSGALG00000017299 380.30 3061.10 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. CIRBP ENSGALG00000030918 373.92 3009.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
39. TMSB4X ENSGALG00000026383 371.37 2989.22 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
40. HBZ ENSGALG00000023740 363.71 2927.56 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
41. RPS10 ENSGALG00000002813 363.71 2927.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. LUM ENSGALG00000011271 361.16 2907.04 lumican [Source:NCBI gene;Acc:417891]
43. ATP6V0C ENSGALG00000009229 352.23 2835.16 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
44. RPS6 ENSGALG00000015082 343.30 2763.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
45. RPS12 ENSGALG00000013990 331.81 2670.79 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL31 ENSGALG00000016775 327.98 2639.97 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. ENO1 ENSGALG00000002377 322.88 2598.91 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
48. RPS16 ENSGALG00000026490 321.60 2588.61 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. ATP5G3 302.46 2434.55 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
50. RPSA 301.18 2424.25 ribosomal protein SA
51. RPL21 ENSGALG00000027035 294.80 2372.89 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. H3-IX H3-IX 290.97 2342.07
53. RPL32 ENSGALG00000027142 287.14 2311.24 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
54. RPS15A ENSGALG00000006771 283.31 2280.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
55. RPLP1 ENSGALG00000030878 280.76 2259.88 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
56. SLC25A6_1 ENSGALG00000016691 271.83 2188.00 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPS14 ENSGALG00000004588 264.17 2126.35 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
58. RPS29 ENSGALG00000012229 262.90 2116.13 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
59. ENSGALG00000028992 ENSGALG00000028992 261.62 2105.82
60. SNRPG ENSGALG00000028409 260.34 2095.52 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
61. RPL35A ENSGALG00000007611, ENSGALG00000041230 259.07 2085.30 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
62. RAN ENSGALG00000002569 256.51 2064.69 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
63. CRHOA CRHOA 255.24 2054.47
64. EIF1 ENSGALG00000028517 253.96 2044.17 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
65. RPL23 ENSGALG00000001634 251.41 2023.64 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPL4 ENSGALG00000007711 246.30 1982.51 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
67. RPL38 ENSGALG00000001465 243.75 1961.98 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. RPL36 ENSGALG00000000474 242.48 1951.76 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
69. RPL23A ENSGALG00000003966 241.20 1941.46 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
70. RPS24 ENSGALG00000004871 238.65 1920.93 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
71. KRT19 ENSGALG00000019719 237.37 1910.63 keratin 19 [Source:NCBI gene;Acc:395861]
72. RPL27 ENSGALG00000002837 234.82 1890.11 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
73. RPL14 ENSGALG00000043379 232.27 1869.58 ribosomal protein L14
74. RPL10A ENSGALG00000002644 230.99 1859.28 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. EIF4EBP1 ENSGALG00000003205 224.61 1807.92 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
76. HMGN2 HMGN2 222.06 1787.40
77. HMGN5 ENSGALG00000007131 219.50 1766.79 high mobility group nucleosome binding domain 5, transcript variant X1
78. TPT1 ENSGALG00000028872 219.50 1766.79 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
79. FKBP4 ENSGALG00000014331 218.23 1756.57 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
80. H2AFZ ENSGALG00000014023 215.68 1736.04 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
81. NDUFB9 ENSGALG00000042242 210.57 1694.91 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. ENSGALG00000002696 ENSGALG00000002696 208.02 1674.39
83. ENSGALG00000018386 ENSGALG00000018386 208.02 1674.39
84. ERH ENSGALG00000017384 204.19 1643.56 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
85. ANP32B ENSGALG00000037483 202.91 1633.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. EIF3F ENSGALG00000005326 201.64 1623.03 eukaryotic translation initiation factor 3 subunit F
87. RPS15 ENSGALG00000015195 199.09 1602.51 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
88. CNN3 ENSGALG00000005597 197.81 1592.21 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
89. LDHB ENSGALG00000035836 197.81 1592.21 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RPS21 ENSGALG00000005338 197.81 1592.21 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
91. RPL13 ENSGALG00000006179 192.70 1551.07 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
92. RPS3A ENSGALG00000010077 192.70 1551.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
93. RPL3 ENSGALG00000012172 190.15 1530.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. RPL12 ENSGALG00000008806 185.05 1489.50 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. RPL6 ENSGALG00000004818 185.05 1489.50 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
96. NONO ENSGALG00000005507 183.77 1479.20 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. MT-ND6 MT-ND6 182.50 1468.97
98. RPL29 ENSGALG00000026978 179.94 1448.37 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
99. RPL36AL ENSGALG00000004952 178.67 1438.14 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
100. SNRPE ENSGALG00000000137 177.39 1427.84 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA