Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s25.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5416.63 43600.80
2. MT-CO3 MT-CO3 4469.70 35978.55
3. MT-ND5 MT-ND5 4161.15 33494.90
4. MT-CO1 MT-CO1 2141.75 17239.87
5. MT-CYB MT-CYB 2048.13 16486.29
6. EEF1A EEF1A 1835.33 14773.37
7. MT-ND4 MT-ND4 1774.69 14285.25
8. gga-mir-3527 gga-mir-3527 1718.30 13831.34
9. MT-ND1 MT-ND1 1651.27 13291.79
10. gga-mir-3533 ENSGALG00000027736 1626.80 13094.82 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. MT-ND3 MT-ND3 1360.81 10953.75
12. GAPDH ENSGALG00000014442 1336.34 10756.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. PPIA ENSGALG00000028600 1066.09 8581.42 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 988.42 7956.22 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. MDK ENSGALG00000008367 700.09 5635.33 midkine [Source:NCBI gene;Acc:423196]
16. RPL8 ENSGALG00000016232 538.36 4333.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. ENSGALG00000018384 ENSGALG00000018384 525.60 4230.78
18. EIF4G2 ENSGALG00000005587 475.59 3828.23 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
19. RPL5 ENSGALG00000005922 472.40 3802.55 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. RPS3 ENSGALG00000017330 469.21 3776.87 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPL26 RPL26 457.50 3682.62
22. RPL7 ENSGALG00000035252 453.25 3648.41 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPL27A ENSGALG00000005948 450.06 3622.73 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL15 ENSGALG00000011290 445.80 3588.44 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. RPL7A ENSGALG00000003197 427.71 3442.82 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. RPS7 ENSGALG00000016392 419.20 3374.32 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
27. CIRBP ENSGALG00000030918 417.07 3357.18 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. MT-ND2 MT-ND2 410.69 3305.82
29. STMN1 ENSGALG00000001475 408.56 3288.68 stathmin 1 [Source:NCBI gene;Acc:396057]
30. RPS23 ENSGALG00000015617 383.03 3083.17 ribosomal protein S23
31. RPS4 RPS4 379.83 3057.42
32. RPS11 ENSGALG00000017299 370.26 2980.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL23 ENSGALG00000001634 359.62 2894.74 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. ENO1 ENSGALG00000002377 357.49 2877.59 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
35. RPL18A 346.85 2791.95 ribosomal protein L18a
36. RPL31 ENSGALG00000016775 344.72 2774.80 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS20 ENSGALG00000014432 343.66 2766.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. RAN ENSGALG00000002569 335.15 2697.77 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. RPS27A ENSGALG00000036790 333.02 2680.62 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. EEF1B2 ENSGALG00000008590 325.57 2620.65 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
41. RPS10 ENSGALG00000002813 322.38 2594.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
42. ATP6V0C ENSGALG00000009229 316.00 2543.62 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
43. H3-IX H3-IX 316.00 2543.62
44. RPS16 ENSGALG00000026490 313.87 2526.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. EIF1 ENSGALG00000028517 305.36 2457.97 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
46. RPS6 ENSGALG00000015082 305.36 2457.97 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. LUM ENSGALG00000011271 295.78 2380.86 lumican [Source:NCBI gene;Acc:417891]
48. RPSA 281.95 2269.54 ribosomal protein SA
49. RPS15A ENSGALG00000006771 277.69 2235.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. RPS12 ENSGALG00000013990 273.44 2201.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. TMSB4X ENSGALG00000026383 271.31 2183.89 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
52. ENSGALG00000028992 ENSGALG00000028992 267.05 2149.60
53. ATP5G3 265.99 2141.07 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
54. RPL27 ENSGALG00000002837 263.86 2123.92 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. ANP32B ENSGALG00000037483 261.73 2106.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. CRHOA CRHOA 261.73 2106.78
57. HMGN5 ENSGALG00000007131 261.73 2106.78 high mobility group nucleosome binding domain 5, transcript variant X1
58. RPL4 ENSGALG00000007711 261.73 2106.78 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
59. RPL21 ENSGALG00000027035 259.61 2089.71 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. FKBP4 ENSGALG00000014331 255.35 2055.42 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
61. RPS24 ENSGALG00000004871 254.29 2046.89 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
62. SLC25A6_1 ENSGALG00000016691 254.29 2046.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
63. RPL35A ENSGALG00000007611, ENSGALG00000041230 250.03 2012.60 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
64. H2AFZ ENSGALG00000014023 248.97 2004.07 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
65. RPS15 ENSGALG00000015195 246.84 1986.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
66. SNRPG ENSGALG00000028409 237.26 1909.81 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
67. RPL32 ENSGALG00000027142 235.14 1892.74 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
68. EIF4EBP1 ENSGALG00000003205 231.94 1866.99 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
69. RPL23A ENSGALG00000003966 231.94 1866.99 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
70. RPL6 ENSGALG00000004818 230.88 1858.45 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. LDHB ENSGALG00000035836 229.82 1849.92 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
72. RPL12 ENSGALG00000008806 228.75 1841.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
73. TPT1 ENSGALG00000028872 227.69 1832.78 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
74. RPL14 ENSGALG00000043379 226.62 1824.16 ribosomal protein L14
75. RPS29 ENSGALG00000012229 223.43 1798.48 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
76. HMGN2 HMGN2 213.86 1721.45
77. RPL13 ENSGALG00000006179 211.73 1704.31 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
78. EIF5A2 ENSGALG00000009309 208.54 1678.63 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
79. HNRNPA3 ENSGALG00000009250 208.54 1678.63 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
80. NONO ENSGALG00000005507 207.47 1670.02 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
81. RPL38 ENSGALG00000001465 201.09 1618.66 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
82. IGF2BP3 ENSGALG00000010961 198.96 1601.52 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
83. KRT19 ENSGALG00000019719 197.90 1592.98 keratin 19 [Source:NCBI gene;Acc:395861]
84. RPL36 ENSGALG00000000474 197.90 1592.98 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
85. RPL10A ENSGALG00000002644 194.70 1567.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS14 ENSGALG00000004588 191.51 1541.55 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
87. RPS3A ENSGALG00000010077 191.51 1541.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
88. HMGB1 ENSGALG00000042875 190.45 1533.01 high mobility group box 1 [Source:NCBI gene;Acc:395724]
89. RPL29 ENSGALG00000026978 189.39 1524.48 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
90. ENSGALG00000018386 ENSGALG00000018386 186.19 1498.72
91. CNN3 ENSGALG00000005597 183.00 1473.05 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
92. RPL3 ENSGALG00000012172 181.94 1464.51 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
93. ERH ENSGALG00000017384 180.87 1455.90 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. ENSGALG00000002696 ENSGALG00000002696 174.49 1404.55
95. HSPE1 ENSGALG00000009070 173.43 1396.01 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
96. MEIS2 ENSGALG00000039118 172.36 1387.40 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
97. RPLP1 ENSGALG00000030878 172.36 1387.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
98. BTF3L4 ENSGALG00000010570 170.23 1370.26 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
99. MIF ENSGALG00000006326 170.23 1370.26 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
100. NDUFB9 ENSGALG00000042242 169.17 1361.72 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA